RNA id: XM_039823732.1


Basic Information

Item Value
RNA id XM_039823732.1
length 2667
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC120573852
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21417316 ~ 21435893 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTACCGATTaccgatccaataccaGTTCAAAGATGAAGTGCTGTGGTCTGCTAACTGCACAGAAGGAACCAGTTCCTCTGAAGAGCGTGGAGGTGGAGCTGGAGGTGAGGGCCCATGTGGCTACAGTGGTCTCCACTCTGAACTATGAGAACAAGGAGGACAAACCACTGGAGGCTGTTTTTGTCTTCCCTCTGCCTGGAGATGCTGCTGTCTGTCACTTCAGTGCTAagattggacagacagagaTTGTAGCTGAGGTGAAGGAGAAACAGAAGGCTCGTGAGGAGTATGATGACGCTTTGAGCTCCGGTCAGCAGGCCTTCCTGTTGGAGGAGAGTGATCAGAGTCCAGATATATTCTCTCTGAGTGTGGGCAGTCTGCGTCCAGGAGAGAGCGCCTCCATCAGGCTGGAGTACGTCACTGAGCTGGCTGTGCAGGCTGATGAAGGGCTGAGGTTTTGTCTGCCTGCTGTGCTCAACCCTCGCTACCAACCTCAGGGAAGTGAAGATGTTTGTATCCAGGTGACCTCTGTTCCAGCCTCTCTGGTGCCCTacagtctgtctttctctgctcgaGTGTCCTCTCCTCGTCCAGTCTCTAAAGTAGAGTCCAACTGTGCCCTGGACGCTCTCCAGTACCTCAACACAGAGCAAACCCAGGCTACGGTCAAGTTGGCTGCAGGACACAAGTTTGACAGAGATGTTGAACTGCTGATTTATTACAAAGATGCCCACCAGCCCACTGCTGTGGTGGAGGTAGGACAGGCCTCTGCTAAGCCTGGCTCTCTGATGGGTGATCCAGTGGTGATGCTGAGCCTGTACCCTGAGTTCCCCCAGGCTGTGATGTCTTCAGTCGCCTCATGTGGAGAGTTTGTGTTATTACTGGATCGATCTGGCAGTATGGATGGGTCCCGTATAAAGAGTGCCAGGGAAACTCTGCTGCTCCTGTTGAAGAGCTTACCCATAGGCTGCTATTTCAACATCTACAGTTTTGGGTCCTGCCATGAACACATCTTCTCTGAGAGTGTGGAGTACAGCCAGAAGACCATGGAAGAAGCTCTGAAGAAAATTGAGGAGATGGGCGCTGATCTGGGAGGAACAGAGATCCTTGAGCCCCTCAAACACATTTACAGCCAGCCCTGCATTCCCAGTCAACCTAGAcaaCTATTTGTCTTTACTGATGGAGAGGTGGGGAATACCAAAGAAgtgataaatctggtgaagaAGAATTCAGGATCCCACAGGTGTTTCTCTTTTGGGATTGGGGAAGGGGCCAGCTCTGCTCTTATCAACGGGTTGGCCAAGGAAGGAGGAGGTCACGCTCAGTTCATCACAGGGACTGACAGGATGCAACCCAAAGTGATGCAGTCGCTGCGTTTTGCTCTGCACCCAGCTGTGGTGGACATCTCAGTCAAGTGGGATTTGCCAAAGGGAGTGTCTGTTACTTGTCtctctccaccaatcacagcacttttccagggtcaaaggtcactggTTTATGCCCAGCTCACTGGAAAGAGTTCAGCAGCGGAGGGCTGTGTGACGGTGAAGTACAGCCTGGCAGGTCATCCCACTCAGAACCAGCTGCACTTCAGTCTCAAACCTGCAGAGGACACTGGAATAACAGTCCACAGGTTGGGTGCTCGGAGTCTGATTCGCTCTCTGGAGATGGAGGAGAGCGAATTGCGCAGAGGAGAGCGGGATGAAGAAGTGAAGAAGAAGCTGGTGGAGCTCAGTGTCCAATCAGGAGTGAGCAGTGCCTTCACTGCCTTCATTGCTGTCAACAAAGGAGATGGCGAGGCGATTCAAGGACCTCTGGTGGTCAGAAATGTTCCAACACCCTGGCTGACGGGTGGTTGCGGTTCGCTGCGGTCACTCACAATGATGCAAGGCCCAATGGTTTTTGGTGCAATGCAATCCAACATGAGAATGACAAGAAGTGCATGTGCCTCAGTTGCAAAGCAGAGGATGATGTGTGACAGTCTCCCCATGTTTCAATGTGAGAGTATAAGCATTGAGCACAAGCAGCCACCCAGAGACCCTTTGCTGCAGCTGGTCTCCCTCCAGAAGGCGTCTGGCTGCTGGGTGCTGGATCCAGCTCTGGCTGCTGCACTGGGAAAGACCAGCAGggaggtggaaaagcccaagcCTGCATTGGTGAACCAGGAAGTATGGGCCACCATTCTGGCTCTGATCTGGCTTCATGGTTTCAAGATGGATGCTCAGGAAGAGTGGGAGCTTCTGGCTATGAAGGCGGTGTCATGGCTCCGTGCCCAGAATGcCCGACGTGTGACAGAGTGTGTGAAAGCTGGAAATGCTCTGTTGGGTTGCCACATGCAGAAAGACGCCCTGGGACTCTAAGATTTTCATTAAAGTGGCTTCTCTTTAGGATTGGTACAACGAAGCAGATTATCTCCATCCTACAAGCTTTACATTATAAACATTGCGTGTTTGCACAGCAGGAATGAATTGATttgaaaaatactttgcacTATTTTACGTGAAAAAGAAGAAGCCATATTTAATTTGCAAGATAGGCCTTACATCTATCCATTGTCAGTCATGTAACAACAAGTTCTTTTGCTTGAAACCTTAATGTCAAGTTCTATATAAAACAGTTTTACTTGTGAAAATAAAACCTGATGAAGGATATTTGAATGAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25298 lncRNA downstream 6117 21410908 ~ 21411199 (-) True G18492
TU25204 lncRNA downstream 301322 21113372 ~ 21115994 (-) True G18429
XR_005642012.1 lncRNA downstream 330441 21085988 ~ 21086875 (-) False LOC120575525
TU25179 lncRNA downstream 330488 21085093 ~ 21086828 (-) True LOC120575525
TU25431 lncRNA upstream 93088 21527455 ~ 21583403 (-) True G18591
TU25432 lncRNA upstream 95630 21529997 ~ 21532748 (-) True LOC120572042
XR_005641345.1 lncRNA upstream 95917 21530284 ~ 21532755 (-) False LOC120572042
TU25448 lncRNA upstream 176770 21611137 ~ 21612250 (-) False LOC120572205
TU25483 lncRNA upstream 198613 21632980 ~ 21695722 (-) True G18626
XM_039780915.1 mRNA downstream 11788 21295349 ~ 21405528 (-) False rap1gap2a
XM_039780963.1 mRNA downstream 11789 21295349 ~ 21405527 (-) False rap1gap2a
XM_039780924.1 mRNA downstream 11790 21295349 ~ 21405526 (-) False rap1gap2a
XM_039780948.1 mRNA downstream 23798 21295349 ~ 21393518 (-) False rap1gap2a
XM_039780943.1 mRNA downstream 68473 21295349 ~ 21348843 (-) False rap1gap2a
XM_039823663.1 mRNA upstream 8976 21443343 ~ 21462495 (-) True LOC120573817
XM_039823672.1 mRNA upstream 8976 21443343 ~ 21462494 (-) False LOC120573817
XM_039823696.1 mRNA upstream 8976 21443343 ~ 21462493 (-) False LOC120573817
XM_039823687.1 mRNA upstream 8976 21443343 ~ 21454457 (-) False LOC120573817
XM_039823681.1 mRNA upstream 8976 21443343 ~ 21454457 (-) False LOC120573817
TU25281 other downstream 155393 21246839 ~ 21261923 (-) False slc6a4a
TU25187 other downstream 320115 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 1275804 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1607186 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 3194462 18205582 ~ 18222854 (-) False LOC120545639
TU25499 other upstream 229728 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 567537 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1704846 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1705033 23139400 ~ 23148515 (-) False G18885
TU25890 other upstream 1812236 23246603 ~ 23252420 (-) True G18948

Expression Profile