RNA id: XM_039823778.1


Basic Information

Item Value
RNA id XM_039823778.1
length 2907
RNA type mRNA
GC content 0.43
exon number 27
gene id LOC120573880
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21097940 ~ 21108764 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCACAGGTCTGTCTGTCAGATGAGACGTATGTTCCTGGACAGAGGAGAAGTCTGGACCTAAATGGAGTCCACCCTCCCCAAAGCTCTAGCTGGAGCCGGCGCGGCAGGTGTCCAGCAGCCAGCGACAGTCCCTCCTGGTGGTTTGCAGCCACTGGCTGAAGCAGACCAGCCCGCAGACCTGGGCAAGGTAGAGGGAACCAAGAGTCAATCTGGACACCCGGCAGGGGCAAAAGATGGACAGGAGTTGAACTCATTTGACAGCTCTCTGTCGTCCTCGGACAGCGAGGACGAGGGTATCGGCAAGagagacaagaagaagaaacagctaaagaagaagaagaagaaggagaagaagaaaGATTCCAGCTCGGcatcatcttcctcctcttcttcttcctccagcAGCTCCTCAGACAGTGACAGTGAGGataacaagaagaagaagaagaagaagaaaaagaagaacaacaacaacaacaacaaggatGAGAAGAAAGAGTACGGCTGGGACAGTGTTAGCACATCTGCTCCTGATGGCCAAATGGAACAGCAGAATGCAGAAGGTCTGAAGATGAGCCAGGATTTTGACTCATCAGATGACGAGAAtgacaagaagaaagagaagaataagaaggacaagaagaagaagaaaaagaagaagaagGATTCTTCCTCATCTGACAGTTCATCCTCTGACAGTGAGGatgacaagaagaagaagaagaagaagaaaaagaagacgaaaaagaagaaaaagGCCTCCAGCTCCTCTTCCTCAGATAGCTCTTCATCATCCTCCTCTGACAGCGAcgatgacaaaaagaaaaagaagaaaaaggacaagaagaaaaggaaaatgaaagacaagaaaaagGATTCCAGCTCTTCATCAGCATCTTCATCTTCTGACAGTGATAAAgataagaaaaagaagaaggacaagaaaaagaagaaggataagaaaaagGACGAAGAGCAGAATGAGCTCTGCAGTGCTACTGCTCTTTTAGCAATTGTACTGCTGGACTCCTCTGCAGATAGTGAGCTTGCAGGACCATGTGCTGATGGAGATAAAAAGAAAGATGAAGTTGCTGACAAGGCCAAGAAAGAGCTTAAAGCCACAGAAGAAGGCAAACTGTCCTCTGGATCGGCAGCAGGGGGAGCAAAAGCATTCCCTATTGGTACTGAGGAAGGCCACCTGAGTGATGATGAGGGAGAAGGAGGTGAGGAGAAggataagaagaagaagaagaagaagaagaagaaaaagaaaaAGGACTCGTCCAGCTCCTCTTCTTCATCTGATAGCTCCTCCTCAGACAGCGAAGatgacaagaaaaagaaaaagaaggtgaAGAACAAGAAGGATAAGCTTTgtgcctcctcctcatcctctgaTAGTGAAgaggacaagaagaagaaatataagtggctgaagaagaagaaggacaaAGAGTCCTGCCCTTCCTCCTCGTCTTCGTCCTCTGATAGTGAAgaggacaagaagaagaaaaataagtgGCTGAAGAAGAAGCAGGATTCCAGCTCTTCCTCCTCTGATAGTGAAGatgacaagaagaagaagaaggagaagaagaagaagaagaagaagaagaagaAGGACTCTTCCTCATCTGACAGTGAGGatgacaagaagaagaagaagaagaagaaaaagaagaagaagaagaaaaagAAGTCCAGCTCTTCCTCCTCTACCTCGGATAGTGATGATGACAAGaagaagaagaagaagaaagataagaagaagaagaagaagaaggataagaagaaaaagaaaaagaaggactcttcttcttctgactcctcCAGTGATTCTTCTAGTGATGACgatgagaagaaaaagaagaaggataagaagaagaaaaagaaagccaagaaaaagGACTCAGATTCTTCTAGCAGTGATGAtgacaagaagaaaaagaagaaagacaagaagaaagagaaggataagaagaagaaaaagaaagacaagaaaaagGACTCAGATTCATCTAGCAGTGATGatgacaagaagaagaaaaagaagaaagacaagaagaagaaaaagaaggacgACAAAAAGAAGGACTCCAGCAGTTCTAGTGACAGtgacaagaaaaataaaaagAGTTCGGGCTCATCAGGAAGTGAAACtgacaagaagaaaaagattGAAAGCCCTGATGGTGAGCAAAGTGGCCTGCCAAAAACTGAAGTttcaagctcagttggtggCAGCCTTTCAGCTCCCGGTGACAGCTACTCTAAGCCTGGTGGTTCTTCTACTTCTGTCTCCTTCGTGTCACTCCCGTCCAAACCCATGGTGAAGCTGGATCCTCTGAGTCCTTCAGCTTTCTCCAAGCTCtctgcctctggctctttactGAGTATGGGAGATAGGGCTCCCATTCGCAGACCTCCCAGCCCCATGGAGTCTCTGATGGCGAGCACAAGGAGGTTTGGAGACGGAGCGACCCGTTCCACCTCGCACCTCAACTCTAGTGACGTATTGAGAGGCGCCAAGCCTTACTAATAATGAGATGTCATAGATCAAAATAGATGttgtgtatttctttaaaaagtatGGCTTACACGACACTGAAGGCTGTGTGATGTCATATGCTCTAATGATGTTCTTATCACCCTGATTTTATGCATGAATATTATGATGAGAGGTTACTATATAAAGATGCATTGCGACatgataaaacattttaagttgAGGAAGAAAATGATACCATGATAaatgactatatatatatatatatatatatatatatatatataggcaatACTTTTTAATTGGTAAGAAAATGCACATTAGTGGCAGAAATATCAATTCACAATCACATGAAATAATTCAAAATCCTTGCTTTGCTGAATAAAACAATgtgatttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005642012.1 lncRNA downstream 11065 21085988 ~ 21086875 (-) False LOC120575525
TU25179 lncRNA downstream 11112 21085093 ~ 21086828 (-) True LOC120575525
TU25180 lncRNA downstream 11112 21085093 ~ 21086828 (-) False LOC120575525
TU25149 lncRNA downstream 160691 20936993 ~ 20937249 (-) True G18391
TU25143 lncRNA downstream 209911 20887806 ~ 20888029 (-) True G18385
TU25204 lncRNA upstream 4608 21113372 ~ 21115994 (-) True G18429
TU25298 lncRNA upstream 302144 21410908 ~ 21411199 (-) True G18492
TU25431 lncRNA upstream 418691 21527455 ~ 21583403 (-) True G18591
TU25432 lncRNA upstream 421233 21529997 ~ 21532748 (-) True LOC120572042
XR_005641345.1 lncRNA upstream 421520 21530284 ~ 21532755 (-) False LOC120572042
XM_039818712.1 mRNA downstream 947 21094177 ~ 21096993 (-) False si:ch1073-340i21.1
XM_039826335.1 mRNA downstream 17165 20963840 ~ 21080775 (-) True igsf11
XM_039826337.1 mRNA downstream 17166 20963840 ~ 21080774 (-) False igsf11
XM_039826326.1 mRNA downstream 39703 20963840 ~ 21058237 (-) False igsf11
XM_039824468.1 mRNA downstream 659810 20225831 ~ 20438130 (-) True LOC120574226
XM_039823852.1 mRNA upstream 13100 21121864 ~ 21151383 (-) False git1
XM_039823841.1 mRNA upstream 13100 21121864 ~ 21151383 (-) True git1
XM_039823856.1 mRNA upstream 13100 21121864 ~ 21151382 (-) False git1
XM_039823847.1 mRNA upstream 13100 21121864 ~ 21151366 (-) False git1
XM_039823874.1 mRNA upstream 86624 21195388 ~ 21227407 (-) False ssh2a
TU25187 other downstream 739 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 956428 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1287810 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 2875086 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 2945972 18132087 ~ 18151968 (-) False zgc:165508
TU25281 other upstream 138075 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 555331 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 893140 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 2030449 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 2030636 23139400 ~ 23148515 (-) False G18885

Expression Profile