RNA id: XM_039823856.1


Basic Information

Item Value
RNA id XM_039823856.1
length 3943
RNA type mRNA
GC content 0.52
exon number 20
gene id git1
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 21121864 ~ 21151383 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gAAACTGTCAGGTTAGAGATCTGCCGTCTCTCGGTGAGTTGCAGCCAATGCAGCGAACAGATTTAGTAAATATTCCGATATGAGGTTCATACAAACAGCCAGATTAACTATGTTCTCATAACTTTGCTCCAGACTTGAGTTCAGTAACGTTAGTGGACGTGGGCGAAGGGACCGCAAGCCAGGAACAAACGGGAAATTCAACTGTCAGCTGGCCGGGAAAACCGATCGCACCACCCGGCTTCCGGGGATTCAGGGGCCGCATCGGTTGACTGCAGACGTCGGTCGGTAGCTCGGGGGAGTTATACATCATCTACATCATCGCCGACATCCACCTCTCGGTTTCAGCGACTTTCGAGATGTCAAGAAAGCTACAAAGGACAGAAGTCTGCGCGGACTGCAGTGCGCCAGACCCGGGCTGGACCAGTATCAACCGAGGGGTCCTGATCTGTGATGAATGCTGTTCAGTCCACCGCAGCTTAGGTCGCCATATCTCTATAGTCAAGCACCTGAGGCACAGTGGATGGCCTCCCGCACTACTGCAGatgGTTCAGACGTTGGCCAGTAACGGGGCCAACTCCATATGGGAACACAGCCTCCTGGACCCTGCTCAGGTACAGAGCGGTCGTAGGAAACCCAACCCCCAGGACAAAGTCCATCCCACTAAGTCCGAGTTTATCAGAGCCAAATACCAGATGCTGGCCTTTGTCCACAAGCTGCCCTGCCGCGATGATGATGGCGTCACTACCAAGGACCTCAGTAAGCAACTTCACTCAAGTGTGCGGACGGGGAGTTTAGAGACGTGTCTTCGGCTCCTGTCCCTTGGTGCTCAGGCCAACTTCTTCCACCCGGAGAAAGGCACTACCCCGCTCCATGTGGCAGCCAAGGCAGGCCAGATCCTGCAGGCTGAGCTGCTAGTGGTGTACGGTGCAGACCCCGGAGCACCTGACATCAACGGACGGACACCTATGGACTACGCAAGgcaagcgggccatatAGAGCTAGCAGAGCGGCTGGTAGAGTGTCAGTACGAACTGACGGACAGACTAGCCTTCTACCTTTGTGGGCGGCGCCCAGATCACAAGAATGGCCATTATATCATTCCTCAAATGGCAGACAGAGCTCGTCCTAAGTGCCCGACACAGAGTCTGGACCTCTCAGAATTGGCCAAGGCTGCCAAGAAGAAGCTCCAAGCGCTCAACAATCGGCTGTTTGAGGAGCTAGCAATGGATGTGTATGATGAGGTAGATCGAAGAGAAAACGATGCAGTGTGGCTTACGACCCAGAACCACAGCACTCTGGTAACAGAACGCAGCGCGGTGCCCTTCCTACCAGTCAATCCTGAATACTCTGCCACACGCAACCagGGCCGTCAGAAGCTGGCCCGTTTCAACGCTCGGGAGTTTGCCACACTCATCATCGACATCCTGAGTGACGCCAAAAGGAGACAGCAGGGGAAAGGTCTCAGCAGTCCTACTGACCCATTTGATCTGGGCATTGATGATGACCAGCATGACTACGACAGTGTAGCCTCTGATGAAGACACAGACAGCGAGCTTACCAcccagaacaacaacaacacgcaACGCAGCAACCGTGCAAAGAGTATGGACTCATCAGACTTGTCAGACGGCCCCATCACCCTGCAGGAGTACCTGGAGGTAAAGAAGGCGCTGGCCTCCTCAGAAGCCAAGGTGCAACAGCTGATGAAGGTCAACAACAACCTGAGCGATGAGCTCCGGCGGCTCCAGAAGGAGGTACGGAAGGGTGGTATAGGGGGTCCAGCACCGTATGGAGGCCAacatctgtctggatctacaGAGATGGGCAGATACATGGTCCCCAAACCAGAGAAGCACGGCAGTGGCACTGACAGTGACTatgacaacacacaaacatacgaCCTCTCGCTAAGTATGGGGCGCAGCAGCGAGGAGGAAGGTGGTCGTGGGGAGTctgaggagggaggaggtggggaCGTGGGGGAGCCAGACCCCACCCTACCCTGCACAGAGGATGTCATACTGAAGACTGAGCAGGTGACCAAGAACATCCAGGAGCTGCTCAGGGCTGCTCAGGAGTTCAAACACGACAGCTTTGTTCCATGTTCTGAGAAGATCCACTCTGCTGTCACTGAGATGGCCTCACTCTTCCCCAAACGCCCGGCATTAGACGCAGTCCACTGCTCCCTCCGCCtgctggcttccagtgcctcgcGGTTGCAGGTGGAGTGCCGTAAGGCGGCGCCCTCAGAGCCTGGCGGCCCTGCGGTGGACTACCAACTCCTCACTCAGCAGGTCATCCAGTGCGCCTACGACATCGCTAAGGCTGCCAAGCAGCTGGTCACCATCACTACTCGTGAGAAGAAACAGTGACCCAACAACTACATGGATGGATCGAGagggaagagggaggagagagaacgGATCAATGCATGGGTGGGCTAAGCGGGATGGGGAGGGGCTTCTCGGAGAGGAAGATAGAGGGGAAAACCGGATCACACTATTAATGAGAGGACGAGGAAGCAGGAGTGATCAGGAGAATGATGGCCGCGATGacggaagggaaaaaaaagtctggAACATGCATGGCAAAGGAATCGGGTGAAAGCAAAGCGAACTGATTGTTTAGTAAAAACACTACAGGGGACTGAAAAAGGAGAAATTCCACAAGTGTGGAAGAGAAAGTAGGGTAGGACACGTGGAAGGATCCAACATGGGAACTACAGCCTGCTGCAACCTAAGTTATCTGTTGGAGTCAGATGTGTATAATAAACCACTTAAACTGTGATAAGCATACGTGAAATCCAACGGTGGCGATGTACAGTGAACTGGATCCGGAGATGATACCGCTTTATTTATTCTCCCCTGTCACTCgtcatccctccctcccccggTTTACCTCAACTAGGGAGAGAGGAAGTAATGCGCTGCGAGAGAGGGAAGTAGATAGaccaaaaaaatgacatactcCACACACCATCTCTGTCCCTCCCATCCTGTGGAGTCAGGAcgttctctcctccctccctctcccccccccctccttctccctctccaaCTAGACACGAGGCCCCTCTGTCTCCTATCCCGTCCCAGACAAGATTCGCTTGCGGTGCAGAGGAGGGTCTCCTGGGACCCCATCCagctccccccccacccacccagccTCTCAGATGCTTCCTCCTGGTTAACTTTTGCAGGGGGGCTCCAGCGTTTCTCTGACCCGTCACCCCCCCTTTTGTCGGTGGTACACAGCATGATCTGGCATGTTTTgatttctttcctctctcttcttcttttttttcttttcttttttttttatatgcagaTTGGTTTGGTCTGCACCTCCTGAGGACAAAAAAATGACTGacttacacaaacaaacacttaCACTGGAATAATTGTGACTTATTGTTGTCGTTTATTAtgcctattgtttttttttgtattgacaTTTTTACTGACTGTCATCTTTGATTTaactgtttatgtatgtttattttattgtctCAAATATGATTTCTCATTTAGTGGAATAGGGAGACAGGTGGAAGTATGTGCTTAACTGGGATTCaagtaagcacacacacagacacatgaaaGAAATAACCTGTGATGGTCCTCAACATTTCTCAAGCACTCCTTTTCTAAGTGACAgttgaggttgttttttttcatgttgtgatttgtcCTGTGGCCAAGGGGCTGAACAGTTGCCAAAGGGGAGAGGGTGTTGGGGGAGATTTGTTTTTGGTCTCGATTTTCTGTCCGACCGAAAACCCCTTGGTGCGTTATGACAGGACCTTGatcaaaaatgttttggctTGACTTATCTCACAATTTGCCTCATTTAACAGAGCCAGTGGAATCATCTCAAAAACCGTATTCATTCTTGCTGTACCAAGCAAGATAACAGTTGGTCCAGTTTGTGTATGAGGGCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25204 lncRNA downstream 5870 21113372 ~ 21115994 (-) True G18429
XR_005642012.1 lncRNA downstream 34989 21085988 ~ 21086875 (-) False LOC120575525
TU25179 lncRNA downstream 35036 21085093 ~ 21086828 (-) True LOC120575525
TU25180 lncRNA downstream 35036 21085093 ~ 21086828 (-) False LOC120575525
TU25149 lncRNA downstream 184615 20936993 ~ 20937249 (-) True G18391
TU25298 lncRNA upstream 259526 21410908 ~ 21411199 (-) True G18492
TU25431 lncRNA upstream 376073 21527455 ~ 21583403 (-) True G18591
TU25432 lncRNA upstream 378615 21529997 ~ 21532748 (-) True LOC120572042
XR_005641345.1 lncRNA upstream 378902 21530284 ~ 21532755 (-) False LOC120572042
TU25448 lncRNA upstream 459755 21611137 ~ 21612250 (-) False LOC120572205
XM_039823804.1 mRNA downstream 13100 21097940 ~ 21108764 (-) False LOC120573880
XM_039823874.1 mRNA upstream 44006 21195388 ~ 21227407 (-) False ssh2a
XM_039823883.1 mRNA upstream 44006 21195388 ~ 21214066 (-) False ssh2a
XM_039823868.1 mRNA upstream 44006 21195388 ~ 21214066 (-) True ssh2a
XM_039823899.1 mRNA upstream 44006 21195388 ~ 21213671 (-) False ssh2a
XM_039823891.1 mRNA upstream 44006 21195388 ~ 21207645 (-) False ssh2a
TU25187 other downstream 24663 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25100 other downstream 980352 20137342 ~ 20141512 (-) False LOC120547993
XR_005637451.1 other downstream 1311734 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 2899010 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 2969896 18132087 ~ 18151968 (-) False zgc:165508
TU25281 other upstream 95457 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 512713 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 850522 22001904 ~ 22007171 (-) False LOC120551419
TU25812 other upstream 1987831 23139213 ~ 23148515 (-) True G18885
TU25813 other upstream 1988018 23139400 ~ 23148515 (-) False G18885

Expression Profile