RNA id: XR_005641815.1


Basic Information

Item Value
RNA id XR_005641815.1
length 5726
RNA type transcript
GC content 0.39
exon number 11
gene id LOC120574039
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 43236682 ~ 43346673 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCATTATTCATTCCAAGAAACAATTTGCTTAATCAATGAATCCTCTCAATATGTATTTATGAAAATCATCAGCATCAGTAGGTGTTTCCTGGGGAGAAAAGATGGAGGGATAGATGTCCATGACTAACTTTTTGCTATCTTCTGGGTCAAGGGTCACTCTGATGACAATGTGCCAGACTGGGTTGCTGACTCTTCCTATTCACTCTCTAGTCTCCTCTGCCTTACAAATCTCTGCAGGCAGCTCAGCCAACAATCATGTGTTATCCCATACAATTAAAATCTGGTTGCAATTCAGGAAGCATTTTGGTTTTCAAAGGCCCTCTGCTATGGCACCTATTATGTCTAACCACCTGTTTACACCAGCTATCATAGACATGGCCTTTTGTACATGGCATGGGAACAGAATAAAGTTTATATTAGATCTTTATGTTAGAActctctctcgctttctttctctctcactctctctctcgttgACTGCCCCCTCACTCCCCTGTCATCTTCCTTCTGAATCATGGTTGGAACAATTCtatttacattcacaaaaagctAGCAAGATGCCAATCTTTTCAATctctttacttttatacttcttGCATAGTCTGTAGGGGTGCTGTGTGCAAGTTAATGTATCAACCTACAATATGAAAGTGCTTAACCCTTATAAGAGCCACTGAATCTTAGTAATATTGTGTTTTTCCTCTTCACCCAGGTCAGTGACAGACCCCAGAGATGGAAAGCGAGTTGCCCtaaaaaaaatgcccaatgTCTTCCAAAACCTTGTTTCTTGCAAGAGGGTATTTCGGGAGCTCAAGATGCTATGCTTCTTCAAACATGAAAACGTGCTCTCTGCTCTGGATATACTACAACCTCCACACATCGACTTCTTTGAAGAAATCTATGTCGTGACTGAACTGATGCAGAGTGACCTCCATAAGATCATCGTATCACCACAGCCTCTGAGCTCAGACCACGCCAAAGTTTTTCTTTATCAGATTCTACGAGGACTTAAATACCTTCATTCTGCTGGCATTCTGCACCGAGACATCAAGCCTGGCAACCTCCTGGTCAACAGCAACTGTGTGCTCAAGATCTGTGATTTTGGCCTGGCCCGAGTGGAGGAGTTAGACGAGTCACGACACATGACTCAGGAAGTGGTAACACAGTATTACCGAGCTCCTGAGATCCTCATGGGGAGCCGCCATTACTCCAACTCCATCGATATCTGGTCTGTGGGCTGCATCTTTGCTGAACTGCTGGGGCGGCGCATCCTGTTCCAAGCCCAAAGTCCCATTCAGCAGCTGGATTTAATCACTGACCTGTTGGGGATTCCCTCTATGGAAGCGATGAGGACGGCGTGTGAAGGCGCTCGTGCACACATTCTCAGAGGACCTCAAAAGCAACCATCCCTTCCTGTTCTGTACACACTGTCTAGCCAAGCAACCCATGAAGCTGTCCACCTCCTCTGTAGGATGCTGGTATTTGATCCGTCAAAGAGGATTTCAGCAAAGGATGCCCTGGCTCACCCTTACCTGGACGAGGGTCGACTGCGCTACCATACATGCATGTGCAAATGCTGCTACACCACATCCTCTGGCCGTGTTTACACCAGTGACTTTGAGCCTGTCACTAATCCCAAGTTTGATGATGGCTTTGAGAAGAATCTGAGCTCTGTGAGACAGGTCAAAGAGATCATCCATCGGTTCATTTTGGAACAGCAAAAGGGGAGTCGAGTGCCACTCTGCATTAACCCTCAATCAGCTGCTTTTAAAAGCTTTATCAGTTCCACAGTGGCTCAACCCTCTGAAATGCCTCCGTCTCCACTGGTGTGGGAATAGCTGCTGCTGTGTCATCATTTTTCCCAACTGACAAGCTGCTAAACTGGGAACAAGAATGTGTCTCAACGTCTTCTATCATCTGCGTAGCATTTCACTGGAGAGCAGGACACACAGGGTTAGTGTTAAAGCTACAGGTGTTGGGAGATCCAGATGTTCTCCTAAGTGATGGGGGATGATGGCCAACACTATGAGAATCAGACCCAGATTGTAAAGAAATCCTTAAAAGTGCTATAGAAGGCTATGGTAGCTTACTAAAGTCAAGATCCAGTCTTCCTTTGGAGCGAGCTTGTTCTTCTTTTGACTATAAGGACAAATGGggagctgtcattgtgttatgaacaaaatatgaaaatgagAAGAAAACATACTAAGGTAAAGAAGCAGTTTAACAAGCAATATCATTATTTAAGGTTGTTAATTCTTTATGTCTACTTGAATATAACCACATACTATGTCATCTTGGATTGCATTAGACAAGCTCACCATACGGAAACGGTAGCATATGAATGATGTATAAATGATGGCATGGTCTCATCCATATGGGTTTTTCTAAATTGTAATCCAGTTTTAAGAGTGCACCCGCTTCACCTCATACATGTACAATgtctccagaaaaaaaaaactttgaagtaaatgatttaatatatttttagaGTTGTTTTCTATTCTTGTTCTTGTACTCTATGGCATGCATTCTTCTCACACCTCAAAGTACGATTATGTATATAAATAGAGAAGCAAATCTATACATCAACCTAAAGAACAATACCACTGTATATAACTTGTATTAGCCTGCACATTTCTAAGGCTGTGaagttaattttatttttaaacttgcatacaaatgtatatgttgtctttattttaaGCCTGCAACTGGGATCTGTAAAGGACAGAAAATCCTGTAATGATTCACAGAATTGTCTTGTTaactgtatgttgtgtgtacAGCAGATTTGTAGATACAACTAGGGAGAAGCcttttttgttaatgttaattacCACAGCGGCACTGTGTGAATATGTATATTAATGATTCACCATGTTGGTCTCTACCTCTTGGGCTCAGTAACTTTGCTTTGTTTACCTCCACACCTTTCTGATTTCATGTGGGGATGAATTAAAAAACGCTTGAATGTCTATTCAAGCTTTTATACTGAAATAACATGTACTGCCCCTGCAAACCTCTACTGCATCAAAGTGCAAAGCATTCACCTgaaatttttaatttatttttaatcatcAGATGTTTGTATTACAAAGTACTACCAATAGCCAAGGGTTCACTGACTGTTAGTACATTTTTACGCTTTGATAGGATAGGACCTTATGGGCAGGGAGAGTGACTACTTACTATGGGTAAAACGGTACACAAaagtcaagttttttttttcatacactGGTTTAAGTGTCATGGTTTGGTGCGAGTTCAGTACGGGAAAAAACCCAAATACATAAGGATacgtttattttcatttaatagaGTTGTGCAAGTGTTCGAGACAGACAAAATCCTCTTGCTGGGGACTGAGCTAACATTTTGCCCACTGGCATATTTGAAATGTTGCTtatttgataatgaaaatagtaTACCAAATGTCTGTGTTACACTGTACGAACACTACACACTTTCCCAAAAGGCAACAGGTCACAATAGGCTATTAAACTGAAAAACATCTCGTATGCTATATTTAAACATTCAAAGCACCCAATAATTTATCGTCCCAGTGATCgcacatctgggtgatgccATTTAATGTGCATTAGCATGTTGGATGTGTTTTCATTCACATACACTACAGTGGTGGAGCAACGTGGACACATCTCTCTCCGCTGCTGTTGTAGCTGACCGGGAACCTGCAGGCGGGTCTTCCAGCTCTGGAGTCCCATTTGCACTCCCCATAATGTGACTGAATCATGACCCCCATACCGTGACTGTTCGGTACGGCCCAACTACTTACACCACAGTGGCTGTGTTAAATGTCTAGGAATTTGATTCAAAGGTGATTATCAAATTTCACATAATTAACTTACGTTTTGTTTTGGATTGTTTTCAGGCTATTAAGAATTTGAATAGTTATTTTTGCATCCCTTGTTGAATAGACTTTAGATTTGGCTATCACTTTTTTGCTTCAAATATTGATATGTGAAATGGTTTGCTAATAAAAAAAGAGCAGGGTTCaattaaaaagtttaaacaatttaaaaatcaaTAGGATTAGGTAATTCCTGATGTTTTCTAACCGAGAACCGGATCCAACATGGAACCAGCTTGTAGAGCCCGGTCCTGGTACCCTATATAGTACCAGGACATTTCTTTCCATTTGTTTATAGAGTTGTGATTGGCTGCATAGTGTTTTTTTCCAATAACTGCGCATAGGGAGCAATGTTTGTCCCTAGGTTTACAAAGACAATGCCCACACAAAGTTTCTATTTAAAGATCATATTGTTTGGGGGTTCAAAGACCTCAATGCACTGCAACTTTAGAAAACCAAACACAAAATCGACAATGTGAAACCTCATCTGCAGCACAGAGAAACACTGCAAATCTAACACAACAGAAATTTTCAGGTGAGATTAAAAACCATTCAATGATGTCCAAAATTGATGATTAAAGattgaaaaatatgttaataGGAGTGTTTCTTAATTTAACTACTATACAATAACAAAACATGATCACATTGAGATCAAATGTTTGCTGCGTGAAATATAAGGCTTTATATTCAACCACCGGGACTTCAGAACAGATAATGATGGTTTCTAACTTATCGCTTTTTATTGAttgagtcctttttttttttttattgcacatCCTAGAGTTCTGCACAGAGCAAAGCAGAACATTCAATGCAAGAGCCTTGTTTTTCTGCTAGAATTTCAGGACAGCGGAAGCCTTTTATAGTTTTTAGCGTCACCTGGAAATGTCTATCATGTTATAACTTATTTATATTATGTGTGATTTTTATTTCTCTATTTgcttgtattttctgtacttgCAGTGTTAACGTGTTTCTATATTGTGTTCAATTTCCCTtagtttcattttattttaggtCTTTTCCTACATACTTATATTTTCTTAAGTGTCAGTTCAGTGCATTAAACTCTCTTGGCCACTATATTATTGCCCAAAAGTATTAAATTACCTGGATGTAACTCTAGTTCTATGAGTACATGGGTAGCACTCCAACATATTTTGATGTTGATTCACCCTGATGATTCTCATTATTTGATTTCTGTTGCGTGGCCATAGTTTAACATAACATAGATCACTCCAACCCATtgtgaaaaaacacattcaacGCAGACAACTCTGACACAAAGGAGACAATAAAAAAGAGGCATGCTGTGGGTGTCTATTGGAAACTGAACAGGAATTTTCTCAGGAATGAACACAGTTCGTGGTGCAAGTCACTCTCCCTCCCTAGGCCTCTATACTCTTTGTGTAGATATAGTAGTTTcctatgttttattttgtgttggaAATAAGTACTTGAATCAAATGATGCTCATTTAGAAAAATTGTAGAGTAATAACTGAAACTTGTGTAAGAAACTAACCACAACTTTGTAACTACTGGTATATTTGGATTCATATAATTTGCCATTTTTACTATGTTTGTATACTTGATGTTTTAATCAGATGCATTGTAATTTGAATAAAACTtgcagtatatacagtacataatgtATCTATTAAACTCTGCGTTTAAGCACTGTAAATCAAAGTTATTGGACTAGAATCAGTTGTCATTTTGGAAAGTGTTATATCTACCCAAAAGGTTCCATCTGAAAAATAATGGTGAAAACATTAAATGTGAAAAAATCTGTCGTTGTCCATACTTCTCTCATAATGTGAAAATTGAAGATAACCTGAAAGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31820 lncRNA downstream 85711 43129539 ~ 43150971 (-) True G23540
TU31817 lncRNA downstream 139664 43088818 ~ 43097018 (-) True G23537
TU31773 lncRNA downstream 246918 42989474 ~ 42989764 (-) True G23497
TU31766 lncRNA downstream 254542 42981855 ~ 42982140 (-) True G23490
TU31762 lncRNA downstream 256795 42979662 ~ 42979887 (-) True G23486
TU31860 lncRNA upstream 4627 43351291 ~ 43351591 (-) True G23579
TU31862 lncRNA upstream 7636 43354300 ~ 43354522 (-) True G23581
TU31872 lncRNA upstream 20193 43366857 ~ 43367080 (-) True G23591
TU31873 lncRNA upstream 21990 43368654 ~ 43368967 (-) True G23592
TU31875 lncRNA upstream 26012 43372676 ~ 43372946 (-) True G23594
XM_039826347.1 mRNA downstream 173437 42992791 ~ 43063245 (-) True efhd1
XM_039786068.1 mRNA downstream 325945 42904813 ~ 42910737 (-) True LOC120549271
XM_039791142.1 mRNA downstream 468116 42739636 ~ 42768566 (-) True gal3st2
XM_039791093.1 mRNA downstream 614722 42393288 ~ 42621960 (-) False fat3a
XM_039792056.1 mRNA upstream 34462 43381126 ~ 43383213 (-) True LOC120553532
XM_039819073.1 mRNA upstream 219916 43566580 ~ 43578411 (-) True LOC120570616
XM_039791810.1 mRNA upstream 367618 43714282 ~ 43716741 (-) False LOC120553425
XM_039791633.1 mRNA upstream 423402 43770066 ~ 43789435 (-) False smco4
XM_039791613.1 mRNA upstream 423402 43770066 ~ 43789435 (-) True smco4
unassigned_transcript_105 other downstream 2204804 41031806 ~ 41031878 (-) True trnak-uuu_7
TU31014 other downstream 3203526 40025882 ~ 40033156 (-) False LOC120546248
XR_005641089.1 other downstream 4500859 38728941 ~ 38735823 (-) False LOC120570635
TU30601 other downstream 4872994 38353060 ~ 38363688 (-) False robo2
XR_005637810.1 other downstream 5490412 37734865 ~ 37746270 (-) False p4ha3
unassigned_transcript_106 other upstream 181190 43527854 ~ 43527925 (-) True trnaa-ugc
unassigned_transcript_107 other upstream 181525 43528189 ~ 43528260 (-) True trnag-ucc_1
unassigned_transcript_108 other upstream 181772 43528436 ~ 43528517 (-) True trnas-aga_1
unassigned_transcript_109 other upstream 182719 43529383 ~ 43529454 (-) True trnag-ucc_2
unassigned_transcript_110 other upstream 183601 43530265 ~ 43530337 (-) True trnaa-ugc_1

Expression Profile