RNA id: XM_039824969.1


Basic Information

Item Value
RNA id XM_039824969.1
length 2143
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC120574562
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 44094848 ~ 44098473 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGCTTTCATTCAAGGGACATTCTGTCAGACAGGCAACAACATAATATCCTATAACTATTTAACTTTTAATACATCTTGGAACGACACAGCTAACGGATTACGGAGATTATCTGTGTGAAGTCATTGCTCCAAAGACACAGCAACCAGCCAGAAGACTGAAGAAAACAATGACCATTGATTTTGTAAGCTTAATTTACATATGGCTGCTGCCACTGACAGCAAGCAGCGCAGTGACATCTGGCCAGAATAATGACTTCACTATTGTGATGATTGGACCGCAGGTAGCAAGAAATAAATTCACTCACGACCAGCTGACGACACAGGAGGCATCCAGCTTAAATCCACTCTTAGATGTCTCAGGTCGTAAAATCGACCTGTCTATCACAGTTGATGTAAATCTAACAgaggaaaaagctacaaaactCAGCACTAAACCTTTACTGCAAACAGTTCAACAATTCAAAACACCTTCAAAGACAGTTTTACCAGGTATTTCAACAGCAGCAACTCCAACAAATGAAGGAAGCATGAAGTCCACGACAGAAATACAATTTAAAGTCACAACATCAGCAACGACGGTTGTAACCAGTCACAGCAGCATCTCAACCACAACTACAAGGGTACCGTCAATACTAAGCAGTTCGACCCAAAACCAGTTAACCAGTGATAAAACTTCACATCCACCTAAACGTCCAACACAGTCTGCAAACCTCATCTCTACTACAACCACATCTACCAAGCCTGTTGAAAACAAATCTACAAATACAAGCCCAGTCACAGTTGGGGATGCTACGCAGTCCGTACGTTTATACAAAATGACAATTGCCACAACAAAGACACCATTCAGCCACATCACAAAGGCAAAGGAAAGACAAGATGCTccagaaaaaaatgcaaagtCCAATAAGGAAAAACACCACAGTAAAGCAGTGGCAGGGCTAATAGGTGGAGCCCTGATATTAATGATGGTAGGATTCCTGATCATCTATATAAAGAAACAGATGCTTCAAAGGCAGCAAATAACAACTAGAGACTGGGCCGGTCCTTCACCATTTCTTGAGGGTGGCGCTGACAATGGCCAGGTAACACTGAGGTCATCTAATCAGATTTCTCTTTCCAGCTTCCTGCCTCATAGACTGTCCAAAAGGTTGTCCTTGCTCCCAGAAACAAATGAGAAGTTAGAAGATATGACACAAGGTACTACATTTGGCGATAAACATCAAGGGAGTACATTTGGTCAAGAGGTAGATGGAAATGATGTACAAGAAAGCTATGGGACTGCTGTAGTTGTTTCAGAAATAAAAAGCACAGAAGATGTTCCAGAGACTGTTGAAAACTCTGTCTTAGCGACCTCTTCACAAACAGAAGAGGACCCGCTATACACATACAACAATTTGGAGGTTGCAAACCACAGTCAAGACCATTCTGCAAATCCCCCCCCTTTATCTGGAGCTGTGGAAAATTCTCTGGCACAACTGAATGAGGGCTTTGGGCAACCATAAGTCAACTTAAGCCCCAAACCCTCCCCCAACGCATTCACTTTCCTGGTTTCTAGGCAGCAACAACTGTGACTGACAGGAAACTACAGGGATTCTCACACcctgctgtattttctttatcACCATGTGGAAATGTCACCCAAACCTGAAGAGTGTGAATCTAAAATGCTTCATTTTCCAACATCTCTGCCCTGCCCAACCTCTGCAAAGTGCTCCTAGAGAAAATATAACAATAAGGCGCATGCAGGCACCTTTGTATTCATCTTGCAGGTGATGGAAAGGTTATGCGGTGGTGAGAACAAACCGTAACTAAGTAACAGGAATCAGGAATTGTCCTGATTAGCTATGACTGATAGCTGTAAATACCACAGGCTAAATGCAAACACTTGCATTGTCTACATCTGCTTAGAAAAACGGGCCGACTCATGTTTCATCTGAAATAGAAGTTAGGGTCAGTCTACTTGAGTGCAAATATTTGTTGTCTCATTAAATTACTATCTGCAGAGTAATGTAGCATGTACAGTTGAAAAGAAAGAAGGGTCAGTACCCTCGGCACTGGGGTTACACGcttttgtattttatatagcAGGTTTCaaaactagggttgggcatcgagaaccgattcctaatcggaatcgtttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32092 lncRNA downstream 271433 43823067 ~ 43823415 (-) True G23759
XR_005637395.1 lncRNA downstream 290960 43801220 ~ 43803888 (-) True LOC120549487
XR_005637394.1 lncRNA downstream 291775 43801220 ~ 43803073 (-) False LOC120549487
TU32075 lncRNA downstream 305438 43770724 ~ 43789410 (-) False smco4
TU32140 lncRNA upstream 38899 44137372 ~ 44137752 (-) True G23799
TU32160 lncRNA upstream 123739 44222212 ~ 44226476 (-) False G23811
TU32162 lncRNA upstream 123739 44222212 ~ 44226539 (-) True G23811
TU32268 lncRNA upstream 675732 44774205 ~ 44774439 (-) True G23906
TU32275 lncRNA upstream 707325 44805798 ~ 44806039 (-) True G23912
XM_039824982.1 mRNA downstream 7597 44083085 ~ 44087251 (-) True omgb
XM_039791633.1 mRNA downstream 305413 43770066 ~ 43789435 (-) False smco4
XM_039791613.1 mRNA downstream 305413 43770066 ~ 43789435 (-) True smco4
XM_039791622.1 mRNA downstream 305417 43770066 ~ 43789431 (-) False smco4
XM_039791810.1 mRNA downstream 378107 43714282 ~ 43716741 (-) False LOC120553425
XM_039824994.1 mRNA upstream 490 44098963 ~ 44114071 (-) False LOC120574575
XM_039825002.1 mRNA upstream 490 44098963 ~ 44114071 (-) True LOC120574575
XM_039789460.1 mRNA upstream 639388 44737861 ~ 44739433 (-) True LOC120551889
XM_039788116.1 mRNA upstream 718155 44816628 ~ 44824987 (-) True mrps23
XM_039777980.1 mRNA upstream 869725 44968198 ~ 44986626 (-) True phf12b
XR_005638163.1 other downstream 378107 43701232 ~ 43716741 (-) True LOC120553425
TU32041 other downstream 393551 43700971 ~ 43701297 (-) False LOC120553425
unassigned_transcript_121 other downstream 555735 43539042 ~ 43539113 (-) True trnag-ucc_6
unassigned_transcript_120 other downstream 556676 43538091 ~ 43538172 (-) True trnas-aga_5
unassigned_transcript_119 other downstream 557266 43537511 ~ 43537582 (-) True trnaa-ugc_4
XR_005637812.1 other upstream 718442 44816915 ~ 44824993 (-) False mrps23
unassigned_transcript_122 other upstream 812354 44910827 ~ 44910898 (-) True trnah-gug
unassigned_transcript_123 other upstream 813383 44911856 ~ 44911928 (-) True trnar-acg_1
unassigned_transcript_124 other upstream 813682 44912155 ~ 44912226 (-) True trnah-gug_1
unassigned_transcript_125 other upstream 814718 44913191 ~ 44913263 (-) True trnar-acg_2

Expression Profile