RNA id: XM_039824982.1


Basic Information

Item Value
RNA id XM_039824982.1
length 2394
RNA type mRNA
GC content 0.47
exon number 3
gene id omgb
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 44083085 ~ 44087251 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacacacacacacactcttgcttACCTCATCAGCACCAGATTGGGCCGCCTAGCTGCTGCaattctctccgtctctctctctccctatgcATCTCTCCTTCCCTTTACCTAAACCTCCGGCTGCATTGGGAGCCTGCAGAGCGGTGAACAGTACGGGCACTTGCAGGCAGCATGTTTAGTGCCACATTACAACATCCATAACAGCCAGAGAAAAGAGGTTGAGACCAGTACCTTCCAACAGCAACCAATAAAGCACAAAGGGAAAAACAGctggaggagaggacaggagaaaAGGAGAGATGACAGACCAACACTAGAGAGCATGAGAGCCCCAGCCATGCCTGTCTGCTCTGCCTCTCTGCTCTGCCTGTTCCTCCTGCTGCTGTGTGGGCTCCTAGGAGGTTGGGTGCTGTCTATCTGCCCCACTGTGTGCTCCTGCAGCAGGGGACATCGTGTGGTGGACTGCTCCTCACGTGGTCTAACCAAGCTACCGCCTGGTCTGCAGCACAACATCCACTTTCTCAACCTCTCTTTCAATAGCTTGCAGGGTCTGGAAAGCCAGCTCACCCACTATGCCCACCTGCGAACCCTGGACCTGTCCTACAACCGCCTGGAGACCCTGCCCCCCGCCCTGCCGCGGTCTCTGTGGGACATCAGAGCGGCAGGCAACCATCTACGCTTGCTGGACAAAAGCGACACAGCTTACCACTGGAACCTGAAAGTACTGGACCTGTCGGACAATGAGCTGGAGAGAGTGGTCTTCATCAACAACACGCTGGCAAATCTCCAAGCTCTCAATCTCAGTCACAACAAGTTTTGGACGGTGCCCACGAATTTGCCGCACAACTTGGAGAGCATTGATTTGTCACATAACTATCTCATGCAGATCCTGCCTGGCTCTTTGGATCGGCTGCCAAAGCTGGCTAAGTTCTTTTTGCATGCTAATCGCTTCTCCTTGTTGTCTAAAGGGATATTTGATAAGCTGGTGGGGCTGGAGGTGCTGACTCTTGGGGATAACCCCTGGGcttgtgaagaagaagaaaacataaCAAAGCTCTTGACATGGGCTGAGCAGACCCGGGCCACCATCTTAGGTTGCCCCTGTTATACAAGACCTATTTGTGGGCAAACCCATCAGGCAACGCCAGGGAGGGAGTGGCACTCTGCGCTGTTCACAGAGATACCACTTTGGGTTAACAGCAGAGTTGAAGGGCATGACGGTCAATCACCTGCAAGGATTGCAGAGGTCACATCTAGTTACCAGGCAAAATCGGCTCTTTTTGAGACAGGAATATATCAGGACAAAAGAGGAGTGAATGAGTCTGGGGACCACAGGCTGTTTGTCTGGACATCTCCCACAAACTTTGACAgtttttccacacacacacaaacaacagcaAGCCCACTGTCTTCAACACAGAAGCCCAAAGCTGCTAACTCAAGGAATAAATGTCACAGACTCCTAATCGACATTCAACAAACTATCACCCTGACTATTTTAGCTATGATGACCGCATTTAACACTTTCTGAACCACCTTGAGTAGATAAAGAATACACTACAGTACTTAATGGAGTATTTCGGACAATGAATGTATAACTATTAAGTCTCCTTCATTTCTCTTGCAAAAAACTGTTTTGACTGTTGCTTACTTTTGTCACTATCAAGTGTGTCATGTTTTCAACTAACACCATGACAATGTATTTCAAAGTCCTACACAAACAGATGAACTGTATACCCCTACATGACAAAACTAATCAAAATATCTGAATACATGGTTCAACTGGAGTGCTACTATTAATGCTCCTATCTCAGTAATGCTTGCACACTGATGGACTGCTCTACTCTATGCTTTTTTCTTAACAGTGATGCCTATGCTACATTTGGTCCTGCTGATTAGTGAGTAGTCAGTCTAAGAAAatctacacaaacaaacaataggAATTCATGGACTGATTATAGGTGTTCCTGTCTGTAGTTGAAACTTGACAAAAAATAGCAAATTAAAGCTGCAGGGATGAATGGCCTGCGCCACTTGCGGCACGTCGGGGGTGCTAGCGGGACACCAGTTGATGCAGTTGTAGATTTCCTTACCATCTGACACTGCACGCAAACGTTAGACATTATTTGCTGGGTGGAGTTTGTGGCACTGGAATGATTAAACATGTTGTAACACTTCCTCAGCCCACTATATGGCACTAGAGAACACACACTAATTATATGTCATGTTGCTGTATACCATGTGTAGCCCACAATGTaaatttcatgtaaatcggattaTCTTCATGACATAAGGCTGACTTCCAGTTGTCAGTTGGCTATGACTGGGACTCAATATGTATGCATGTAGATGTCTTCAGGCCTGGACTCTTATCTAGCATGTG

Function

GO: NA

KEGG:

id description
K16666 OMG; oligodendrocyte myelin glycoprotein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32092 lncRNA downstream 259670 43823067 ~ 43823415 (-) True G23759
XR_005637395.1 lncRNA downstream 279197 43801220 ~ 43803888 (-) True LOC120549487
XR_005637394.1 lncRNA downstream 280012 43801220 ~ 43803073 (-) False LOC120549487
TU32081 lncRNA downstream 293675 43770618 ~ 43789410 (-) False smco4
TU32075 lncRNA downstream 293675 43770724 ~ 43789410 (-) False smco4
TU32140 lncRNA upstream 50121 44137372 ~ 44137752 (-) True G23799
TU32160 lncRNA upstream 134961 44222212 ~ 44226476 (-) False G23811
TU32162 lncRNA upstream 134961 44222212 ~ 44226539 (-) True G23811
TU32268 lncRNA upstream 686954 44774205 ~ 44774439 (-) True G23906
TU32275 lncRNA upstream 718547 44805798 ~ 44806039 (-) True G23912
XM_039791633.1 mRNA downstream 293650 43770066 ~ 43789435 (-) False smco4
XM_039791613.1 mRNA downstream 293650 43770066 ~ 43789435 (-) True smco4
XM_039791622.1 mRNA downstream 293654 43770066 ~ 43789431 (-) False smco4
XM_039791810.1 mRNA downstream 366344 43714282 ~ 43716741 (-) False LOC120553425
XM_039819073.1 mRNA downstream 504674 43566580 ~ 43578411 (-) True LOC120570616
XM_039824969.1 mRNA upstream 7597 44094848 ~ 44098473 (-) True LOC120574562
XM_039824994.1 mRNA upstream 11712 44098963 ~ 44114071 (-) False LOC120574575
XM_039825002.1 mRNA upstream 11712 44098963 ~ 44114071 (-) True LOC120574575
XM_039789460.1 mRNA upstream 650610 44737861 ~ 44739433 (-) True LOC120551889
XM_039788116.1 mRNA upstream 729377 44816628 ~ 44824987 (-) True mrps23
XR_005638163.1 other downstream 366344 43701232 ~ 43716741 (-) True LOC120553425
TU32041 other downstream 381788 43700971 ~ 43701297 (-) False LOC120553425
unassigned_transcript_121 other downstream 543972 43539042 ~ 43539113 (-) True trnag-ucc_6
unassigned_transcript_120 other downstream 544913 43538091 ~ 43538172 (-) True trnas-aga_5
unassigned_transcript_119 other downstream 545503 43537511 ~ 43537582 (-) True trnaa-ugc_4
XR_005637812.1 other upstream 729664 44816915 ~ 44824993 (-) False mrps23
unassigned_transcript_122 other upstream 823576 44910827 ~ 44910898 (-) True trnah-gug
unassigned_transcript_123 other upstream 824605 44911856 ~ 44911928 (-) True trnar-acg_1
unassigned_transcript_124 other upstream 824904 44912155 ~ 44912226 (-) True trnah-gug_1
unassigned_transcript_125 other upstream 825940 44913191 ~ 44913263 (-) True trnar-acg_2

Expression Profile