RNA id: XM_039825868.1


Basic Information

Item Value
RNA id XM_039825868.1
length 3580
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC120575197
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19872479 ~ 19891955 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctttttctctggAATTTTTCTTTGGAATAGTCcctcctgtcctctctctcctttataCTCTTTCATCTCATTAGAAAGTTCTGTTGTGCTGAAAACTTCTGTGCCTTGATTGAATTATCTGACCAGGAGACCAAACTAACTTTCAGGTTAAGTCTCTCCATCCAACCTTCAGATCATCCATCCTTCTCACCATGTCCACCAAAACCACCCAGTCCTTCCCCGATGGGGCCTACATGTCCCTGATGAGAGGcttgagagagctggacctccGGGGCCCCTGTGTTCCCAGTGAACTGGTGCTAATGGACTATGCCTTTCCTTTAGCAATGAACAGCCGAGGCCAGGTCCTGATGGCAGCCTCTCTGTACGGCCGTGGAAGGATCGTGGTTCTGGGTCATGAGGGCTACCTGACCGCGTTTCCTGCTCTGGTAGAGAACGCTCTGACCTGGCTGAGAGGAGATGGATCTGACAACCTGTCTGTGGGGATCCACAAAAACATCAAGGCAGTTGCTGATAAAATCAGCAAATCCAGCTTCCAAGCCAAAGTTGTGGGGGCCTTCAGTGGCAATCTGGGGTTGGGGGTGTATGTGACAGATGCCTACAGCGTGGGCGCTCACGTGAAGGACCTGGTGGCATTTCTGAAAGCTGGAGGAGGAGTGCTGATAGCGGGGCAGGCGTGGAACTGGGCTGCAAATCACCCTAAGGAGAACACGCTGCTTCAGTTTGAGGGGAATAAGGTTTCTGGTGTGGCAGGGATCTACTTCTCTAAACGTTATGGGAAGGTAGagtgcctgcctgtctgccctCAGATCCCATCTTCATGGATGGCTTTATGTGTTGGTCAGGAGTTTGAGGAGGACTTGGCGTTCTTACTCCAGGGGGTTTCAGAGTTTGACCTCCGTGATACATCTGCTTCTGAGCTTCTGGTCCACGGCCCACTAGCCTTCTCCATTGGTACCACTGAGGATCGAGGGGTGTTCCTGGGAGGATCCTACTATGGGCAGGGACGAGTCATTGTGATTACACATGAAGGACTTCTGAAAACAAAGACGCTGGCATCGTTTTGGAAGAATGCCATTAATTGGTTGGACCAAGGCCGGAAGGGGGTTGTTGGTGTTGTACCAGAGCTCAAACTTCCCAGCGAGTCAGGGTTAAAGTATGAGGAGACGGAGTTCAGGAAAGACCTGAGTGTATTTGTTTGTACAGTTTACAAGGATGACCATATGGAAGAAATCCAAAACTTTGTCGCAGAGGGAGGAGGTCTGCTGATTGGCGGACACGCATGGCATTGGTCATACACAAATGTTGGGCAAAACCAAATGATAGATTTCTCAGGAAACAAGATCCTGAACAAAATGGGTTTAAGCGTGTTggtgacaataaatgaaaaaggATCCTACAAGCCTAGCCAGGCCAAGAAAGACACCAACCACTTCCGCCATCTTCTACGTCGCTTTGCTGCTCATGTTACCCAGGGCGAAGAATTTACAAAGCATGACGGGGAACAACTAAATATACTGACCATGAACTTCTTGAACATGAAGGCTTATGACAGCTACTCCTACACACAGGTGCTGTCCATCCTCACTGATGTGTTGAAGAAGTCCGGCATGCCACAGGTGAGTGAGAAGAACCCTGTTAAGAGTCCAAAAGACCGCCTACTCCTCAGTTTAGGGGCAGCGGTATATAACACTTGCCCAGATCCTGATGCCCTCCTGCCCTTCCTCATCAAGGATATCCCCTCAATGCCAGTTGTTAAAAACCAAAGGATCAGGATTAATACGAACACAGCAGGAGAGATGGAGTGGATCAGTACAGGTCTGTACCTTTCTCCTGGTATGAAGACCGAGATAATCATACCAGCAAACATCGTCAACAAGAGCTGGATGATCCAGATAGGTTGTCAAACAGACATACTGAAGGCTGACGAGTTGAAGAGAGCACCAAGTGTTTGTGAGCGATTTCCTGTGACCACAGAGAAGATGCAGGTGTCAAACCTGTGGGGGGGACTCATCTACCTGGTGGCTCCACCCAACACAAAGGTGCAGGGGGCAGAGGTCATAGTGCAGATGGCAGTGCTTGCTCCTTATTACAAGTCTGGTGTGACAACAGCTGCTGATTGGTCGATGCTACGCACAGCTCCCTCACCCTGGGCAGAGTTGGAGTTTGACAACGTCAACCTTACTGTACCATCAGATGTTGTTCGAGACCTGGAGCGCATTGATGTGGTGGCAGCGCTTTGGAATGACATCATGAAGGGCATTGCAGATTTGGCTGCCATACCACACAAATTTGCCCGCAAAGAACGCTTTGTAGCAGATGTGCAGATTTCTGCTGGTTTCATGCATTCAGGCTATCCAATCATGATCCACACAGAATCAGCAAATGAGCTGGTCAGACCAGGTGATGCCAGAACCAAAGGCCTGTGGGGAGAAATTCATGAACTGGGACACAACCAACAAAGAACCTGCTGGGAGTTCCGACCACACACCACAGAGTGTACATGTAACCTGTGGTCAGTGTATGTTCATGAAGAGGTGCTGGGGCTCAACAGGGAAAAGGCTCATCCATCTATGACCTTAACAGAGCGCAAGAGACGTGTAGACGAGTATGTTAAGGGGGGCAAGAAACTCAGCGACTGGACAGTGTGGGTGGCCCTGGAGACATACCTGCAGCTCCAAGGAAAGTTTGGCTGGGATGCCTTTAAAAAGGTGTTTGCTGCCTACCACAAGATTACCGACTATCCCAGTGACAACCACGGAAAGATGAACCTGTATGCTGAGACTTTCTCCCAGTCTGTGAGGATGAACCTGACGGGATTCTTTAAGGCCTGGGGCTGGCCCATAGATAGAGCCACTGAGAAGAAACTCTCCAACCTGCCTCTCTGGAGTGACCACCCGATGGTCTAGTATGAATGAATTTCAGACTGCAGCTGATTAAAAGTGCAGTCTATAATAATTACTAGTTCCAATTGAAAGGTAAATTTCAAGTCTTCTTTGAGGGTCATATTTACTCTAATATTTTTAAAGACATTTGGATGTTTCTTTTATGGAAAAGTAAGCTGTGTCTTTCATATGTAGGTCATGTGCTCTTAGGTTGTTAAAGGTTACGCTATTACTTCTACATTAATTCCTGTAATTGCTTTTTGGATGATGTTTTTACACTGTACGCCTCAAGGGGTGGTTTATCTTTTTGACAGaacaagaaaaacaatttaattcattcattaataCAATATAGTACAGTACCTGACAGTTGACTCAGGCTCTTTGCATAAGGCAGatactttttttacattcttttCCAGTTTTGTATGTTGATAATTGTCTTTACTGTCAATGAAAAAGACACAACTGTCActgtcatttattttcattcatcAAGTTGTGGTtgaataagaataataatatgGGATGCATTAAAGCTGTTGAATTTTATCACACAGTACACCATGTGGGCAacagtgtttttaaaatgaagcatttgGAGCAGCTTTGcttatttgatgatttttacGTACTCGCTTGATTCTTGCAATCTTTTGGGTGGGTGACATTAAAGAGGGAATGGCATCAACAA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24895 lncRNA downstream 16169 19851904 ~ 19856310 (-) True G18216
XR_005637280.1 lncRNA downstream 116486 19754887 ~ 19755993 (-) True LOC120548779
TU24875 lncRNA downstream 155194 19701228 ~ 19717285 (-) False fbxo46
TU24860 lncRNA downstream 222827 19649216 ~ 19649652 (-) True G18184
TU24852 lncRNA downstream 243839 19625403 ~ 19628640 (-) True G18179
TU25072 lncRNA upstream 161265 20053220 ~ 20054134 (-) True G18329
TU25089 lncRNA upstream 224330 20116285 ~ 20119606 (-) True G18337
TU25122 lncRNA upstream 292856 20184811 ~ 20258055 (-) True G18366
TU25123 lncRNA upstream 300925 20192880 ~ 20205688 (-) True G18367
TU25139 lncRNA upstream 814566 20706521 ~ 20706785 (-) True G18381
XM_039787058.1 mRNA downstream 62450 19800751 ~ 19810029 (-) True si:ch211-11n16.2
XM_039779212.1 mRNA downstream 155172 19701227 ~ 19717307 (-) True fbxo46
XM_039779119.1 mRNA downstream 191459 19671088 ~ 19681020 (-) True sars2
XM_039779144.1 mRNA downstream 201908 19663258 ~ 19670571 (-) False LOC120545125
XM_039779133.1 mRNA downstream 201909 19663258 ~ 19670570 (-) True LOC120545125
XM_039825895.1 mRNA upstream 587 19892542 ~ 19906151 (-) False LOC120575210
XM_039825903.1 mRNA upstream 587 19892542 ~ 19906151 (-) True LOC120575210
XM_039825941.1 mRNA upstream 22168 19914123 ~ 19925101 (-) False LOC120575221
XM_039825925.1 mRNA upstream 22168 19914123 ~ 19925101 (-) True LOC120575221
XM_039825909.1 mRNA upstream 22168 19914123 ~ 19924833 (-) False LOC120575221
XR_005637451.1 other downstream 62349 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 1649625 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 1720511 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 2393635 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 2941485 16848161 ~ 16930994 (-) True G17597
TU25100 other upstream 245387 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 1202227 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 1354884 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 1772140 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 2109949 22001904 ~ 22007171 (-) False LOC120551419

Expression Profile