RNA id: XM_039825903.1


Basic Information

Item Value
RNA id XM_039825903.1
length 3398
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC120575210
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19892542 ~ 19906151 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTGGGTTGTTCTGAGTGAAGTCCTTCCTCTTATTGTATTTACCTTTTGTTGACTGAAACAGTCCCTACTGCTCTTGCTCTCATTTATATgcacttttcttttctgtcaggAAGTGTTATTGGAGCATTGCCTGTTTGACAAGCTGTGTCACACAGTGTAATTATACAAGCAACAAGCCAACTTAACTTTCAGTTTTCTTTTGccatcctctctccttctcatcAGAACTTCCGAGAATTGATCCATCTCACCATGTCCAACCAGCCCatccaaaataaaaatgaaggGGCCTACATGTCCCTGATGAGAGGCTTGAGAGAGCTGGACTTCCAGGGCCCCTGTGTTCCCAGTGACCTGGTGCTAATTGGAGACCATGCATTTCCTTTAGCAATGAACGGCCGAGGACAGGTCCTGATGGCAGCCTCTCTGTACGGCCGTGGAAGGATCGTGGTTCTGGGTCATGAGGGCTACCTGACCGCGTTTCCTGCTCTGGTAGAGAACGCTCTGACCTGGCTGAGAGGAGATGGATCTGACAACCTGTCTGTGGGGATCCACGAAAACATCAAGGCAGTTGCTGATAAAATCAGCAAATCCAGCTTCCAAGCCAAAGTTGTGGGGGCCTTCAGTGGCAATCTGGGGgtgggtgtgtatgtgacaGATGCCTACAGCGTGGGTGCTGACGTGAAGGACCTGGTGGCATTTCTGAAAGCTGGAGGAGGAGTGCTGATAGCGGGCCAGGCATGGAGCTGGGCTGAAATGCACCCTAAGGAGAACACGCTGCTTCAGTTTGAGGGGAATAAGGTTGCTGGTGTGGCAGGGATCTACTTCTCTAAACATCAGGTGGAGGTAGAGTGCCTGCCTGTCTACCCACAGATCCCATCTTCATGGATGGCTAGAGTAATCAGTAAGGATTTTGAGGACGACTTAGAGTTCTTACTCCAAGGGGTGTCAGAGTTTGACCTCCAGAATGGGGTAGTAGCTTCTGAGCTTCTGGTCCACGGCTCACTAGCCTTCCCAATAGGTACCACCGAGGATGGCCGAGTGTTCTTGGCAGGAGCCTTCTATGGGCAGGGACGAGTTGTTGTGATTACACATGAAGGACTTCTGAGACGAGAGACACTGGCTCCATTTTGGAACAATGCCATTCATTGGTTGGACGAAGGCCGAAATGGGGTTGTCGGAGTAGTTCCAGATCTCAACGAAGCCTTTAACCTCTTCAGCAAGTCAGACTTTACGTGTGAGAAGACAAACTTCAGGGAAGACctgagtgtatttgtgtgtacagCGTATAGCGATGCACATGTGAAGGAAATACAAGATTTTGTGGCAGAGGGAGGAGGCCTGCTGATTGGTGGACATGCCTGGTACTGGGCACAGACACACCCTGGGCAAAACCCAATCACAGATTTCACAGGAAACAAGATCCTGAACAAAATGGGCTTGAGCCTGCTGGAGAAATACATTGGTGAAGGTTCCTACAAGGCCCCTGTGCCTAGCCAGGCAATCAAAGACGCCTACCACTTCCGCCACCTTCTACACCGCTTTGCTGGTCATGTCACAGAGGGGGAAGAACTtacagagcaggaggaggaataTCTAAAAAAACTGAGTGGGGACTGCATCACCTACTTGCAAATGAAGGCTCACGACTGCTCCTCCTATACACAGGTCGTTTCCACACTCAGCGGCATCTTGAAGAAGTCCGGCATGCCACAGGTGTGTGACAGCTCCCCTGTGAAGAGTCCCAGGGACCACTTACTCCTTAGTTTAGGGGCAGAAGTATATAAGGTTTGCCCAGATCCTGATGCCCTCCTGCCCTACCTTATTAAGGATAATCCCTTGATGCCAGTTGTCTATAACTACAGAATCAAGATTAATGCTAACACAGCAGgaGGGGAGGAGTGGATCAGTACAGGTCTCTACCTGTCCCCTGGTATGAAGACCTACATAGCCGTGCCAGCAGCGATTGTCACCCAGGGATGGAAGGTTCAGATAGGCTGTCAAACAGACAGACTACATGCTGAAGAATTGAAGAGAGCACCGTGTGTTCATGTGCAATTTCCTGTTACCTCAGAGATGATACAAGTGTGGAACCTGTGGGGGGGACTCATCTACCTGGTGGCTCCACCCAATACACAAGTGGAGGGGCTAAAGGTCACAGTGCAGATGGCTGTACCTGCGCCTTACTATAAATCTGGTGTGACAACAGCTGCTGATTGGTTGTTGGTGCGCACAGCTCCCTCCCCCTGGGCAGAGTTGGAGTTTGACAACATCATCCTTACTGTACCATCAGATGTTGTCCGGAGCCTGGATCGCCCTGATGAGTTGGCGGCACATTGGAATGACATCATGAGGGGCATTGCTGACCTAGCTGCCATACCACACAAATTTCCTCGCAAAGAACGTTTTGTTACTGATGTGCAGATTTCCCATGGTTGGATGCATGCTGGTTATCCTATCATGACACACAAGTCCATAGCAGCTGAGCTGGTCAGCACTGTCCATACTGGGAGTGAAGGCCTGTGGGGACCTATCCATGAACTGGGACACAACCAACAAAGAGCCTGCTGGGAGTTCCCACCACACACCACAGAGTGTACATGCAACCTGTGGTCAGTGTATGTGCATGAAGAGGTGCTGGGGATCAATGGAATAATCAGTCCAGCACAAAGGAATACTCATGCAGAAGATTATGCTAAGGGCGGCAGGAAACTCAGCAACTGGCACGTGTTTGTGGCCCTGGAGACATATTTGCAGCTCCGGGATAAGTTTGGTTGGGATGCCTTTAAGAAGGTGTTCGCTGCCTACCACAAGATGAGCAACTTTCCGAGTGACAATGATGGAAAGATGAATCTGTATGCTGAGACTTTCTCCCAGACTGTGGGGATGAACCTGGCTGGATTCTTTAAGGCCTGGGGCTGGCCCATACAAACAGTCACTGAGGAGAAACTCTCCAACCTGCCTCCCTGGACTGACCACCCGATGGTCCAGTATGACTGAACTTCAGACTGCTGCTGGTTAAAAGTGGAGAGAGATGGGTTCAATAAGAACATTATTGACACTGAGTATTTAGTGGGTAATTCAAttaactgacttttttttcttttttgttgttgtgttgtatcATATTTGTTTCAATATTTTAAAGAAGAAACATGAGTTACATAGTTGACCAGATATATACAGCTTTTAAATTCAGTAGCTCCATTTGAGAAAAATCTGTTTTTAGTGTTAATGATTCATGTGAGTTTGGGAaggtaattgtttttgtttctatATGTAATGATGGTAAGTGATTCAGACTGTTTATGAGATGAATAACACATTTACTATTTGTttatgttaacattttattttatcgtCACTGGAAAATATACCAATAAACATTCACTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24895 lncRNA downstream 36232 19851904 ~ 19856310 (-) True G18216
XR_005637280.1 lncRNA downstream 136549 19754887 ~ 19755993 (-) True LOC120548779
TU24875 lncRNA downstream 175257 19701228 ~ 19717285 (-) False fbxo46
TU24860 lncRNA downstream 242890 19649216 ~ 19649652 (-) True G18184
TU24852 lncRNA downstream 263902 19625403 ~ 19628640 (-) True G18179
TU25072 lncRNA upstream 147069 20053220 ~ 20054134 (-) True G18329
TU25089 lncRNA upstream 210134 20116285 ~ 20119606 (-) True G18337
TU25122 lncRNA upstream 278660 20184811 ~ 20258055 (-) True G18366
TU25123 lncRNA upstream 286729 20192880 ~ 20205688 (-) True G18367
TU25139 lncRNA upstream 800370 20706521 ~ 20706785 (-) True G18381
XM_039825868.1 mRNA downstream 587 19872479 ~ 19891955 (-) True LOC120575197
XM_039787058.1 mRNA downstream 82513 19800751 ~ 19810029 (-) True si:ch211-11n16.2
XM_039779212.1 mRNA downstream 175235 19701227 ~ 19717307 (-) True fbxo46
XM_039779119.1 mRNA downstream 211522 19671088 ~ 19681020 (-) True sars2
XM_039779133.1 mRNA downstream 221972 19663258 ~ 19670570 (-) True LOC120545125
XM_039825941.1 mRNA upstream 7972 19914123 ~ 19925101 (-) False LOC120575221
XM_039825925.1 mRNA upstream 7972 19914123 ~ 19925101 (-) True LOC120575221
XM_039825909.1 mRNA upstream 7972 19914123 ~ 19924833 (-) False LOC120575221
XM_039825933.1 mRNA upstream 7972 19914123 ~ 19924801 (-) False LOC120575221
XM_039825917.1 mRNA upstream 7972 19914123 ~ 19924756 (-) False LOC120575221
XR_005637451.1 other downstream 82412 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 1669688 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 1740574 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 2413698 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 2961548 16848161 ~ 16930994 (-) True G17597
TU25100 other upstream 231191 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 1188031 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 1340688 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 1757944 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 2095753 22001904 ~ 22007171 (-) False LOC120551419

Expression Profile