RNA id: XM_039825917.1


Basic Information

Item Value
RNA id XM_039825917.1
length 3580
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC120575221
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19914123 ~ 19925101 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATAATGTAAAGTAATTTCACGGAAAGCCACGTCCGCATGATAGAGTACTTGCTGGATTGCCTGTCTGGAAAACTGTCTGATAATACAAACAGAAAGACAACTCGACTTTCAGGACAACCAACAGACACAATATACATCTACGTGCAACTGTTTAACCACATTTACTAACGCTTAACGACTTTGCACCATTTTTTCCGCATCCTGCTTTCCACCCTTTAAATCTTCAAAGCATTGATCCATCTCACCATGTCCAACCAGCCCatccaaaataaaaatgaaggGGCCTACATGTCCGTGATGAGAGGcttgagagagctggacctccGGGGCCCCTGTGTTCCCAGTGACCTGGTGCTAATTGGAGACCATGCATTTCCTTTAGCAATGAACAGCCGAGGCCAGGTCCTGATGGCAGCCTCTCTGTACGGCCGTGGAAGGATCGTGGTTCTGGGTCATGAGGGCTACCTGACCGCGTTTCCTGCTCTGGTAGAGAACGCTCTGACCTGGCTGAGAGGAGATGGATCTGACAACCTGTCTGTGGGGGTCCACGAAAACATCAAGGCAGTTGCTGATAAAATCAGCAAATCCAGCTTCCAAGCCAACGTTGTGGGGGCCTTCAGTGACAATCTGGGTGTGGGGGTGTATGTGACAGATGCCTACAGCCTGGGTGCTGACGTGAAGGACCTGGTGGCATTTCTGAAAGCTGGAGGAGGAGTGCTGATTGCGGGGCAGGCGTGGAACTGGGCTGCAAATCACCCTACGGAGAACACGCTGCTTCAGTTTGAGGGGAATAAGGTTTCTGGTGTGGCAGGGATCTACTTCTCTAAACGTTATGGGGAGGTAGAGTGCCTGCCTGTCTACCCACAGATCCCATCCTCCTGGATGGCTAGAGTAATCGGAAAGGATTTTGAGGATGACTTGGAGTTCTTACTCGAGGGTGTTTCAGAGTTTGACCTCCAGGGTGGAGCAGTACCTTCTGAGCTTCTGGTCCATGGCCCACTAGCCTTCCCCATTGGTACCACTGGGGATGGACGAGCGTTCCTGGCAGGAGCCTACTATGGGCAGGGACGGGTTATTGTGGTTACACATGAAGGATTTCTGGGACACGAGACGCTGGCTCCATTTTGGAAAAATGCCATTCATTGGCTGGATGAAGGCCGGCAGGGAGTTGTTGGTATAGCGCCAAATCATGCGCTCGAAGTTCTCAGGAAGTCAGGGTTACAATGTGAGAAGACAGACTTCAGGAAAGACCTGAGTGTATTTGTTTGTACAGCGTACAGTGATCATCATGCGGAGGAAATCCGAGACTTTGTTGCAGAGGGAGGAGGACTGCTGATTGGTGGACATGCCTGGTACTGGGCACAGACACACCCTGGGCAAAATGAATTAACAGATTTCCCAGGAAACAAAATCCTGAACACAATGGGCTTGAGCCTGTTGAGGGCAACAATCGGAGGAGGTATCTACAAGGCCCCTGTGCCTAGCCAGGCCATCAAAGACGCCTACCACTTCCGCCATCTTCTACACCGCTTCGCTGGTCATGTCACCCAGGGGGAGGAACTTACAGAGCAGGAGGAGAAATTCCTTACAAAGCTGGGCCAGGACTGTGTTAACTACTTGCAATTGAAGGCTCATGACTGCTCCTCCTATACACAGGTCGTATCCACCCTCACTGACATTGTGATGAAGTCAGACATGCCACAGGTGTGTGAAAGCAGCCCTGTGAAGAGTCCCAAAGACCACCTACTCCTTAGTGTAGCGGCACATGTATATAAGATTTGCCCAGATCCTGATGCCCTCCTGCCATCACTTATCAAGGATAACCCATTGATGCCGGTTGTCTATAACCATAAGATCCAGATTGATGCCAACACAGCAGgaCGGGAGGAGTGGATCAGTACAGGTCTCTACCTCTCTCCTGGAATGAAGACCTACATTTCCATTCCAGCAGAGATTGTCAACAAGGGATGGAAGATCCAGATAGGCTGTCAAACAGACCATCTCCAATCAGAAGTGTTGAAGAGAGCACCGTGTGTTCATGAGCGATTTCCTATAATCTCAGAGATGATGCAAGTGTGGAACCTGTGGGGGGGACTCATCTACCTGGTGGCTCCACTCAATACACAAGTGGAGGGGCTAAAGGTCACAGTGCAGATGGCTGTACCTGCGCCATATTATAAATCTGgTGTGACAACAGCTGCTGATTGGTTGTTGCTGCGGACAGCTCCCTCCCCCTGGGCAGAGTTGGAGTTTGACAACATCATCCTTACTGTACCATCAGATGTTGTTCGGAGCCTGGATCGCCCTGATCAGTTGGCAGCGCATTGGGATGAGATCATGAGGGGCATTGCTGACCTAGCTTCCATACCACACAAATTTCCTCGCAAAGAACGTTTTGTTACTGATGTGCAGATTTCCCATgGTTGGATGCATGCTGGTTATCCTATCATGACACACAAGTCCACAGCAGCTGAGCTGGTCAGCATTGAACATGCTAGGAGTGAAGGCCTGTGGGGCCCCATCCATGAACTGGGACATAACCAGCAGAGAGGCTGCTGGGAATTCCCATCACACACCACAGAATGCACTTGCAACCTATGGTCAGTGTATGTGCATGAAGAGGTGCTGGGTATCAACAGAGCACAGGCTCATCCATGTATGACTTTAGAAAATCGAAACAGACGAGCAGAGGACTATGCTAAGAACGGCAAGAAACTGAGCAACTGGCACATGTGGGTGGCCCTGGAGACATACATGCAGCTCCAGGATAAGTTTGGTTGGGATGCCTTTAAGAAGGTGTTCGCTGCCTACCACAAGATGAGCAACTTTCCGAGTGACAATGATGGAAAGATGAATCTGTATGCTGAGACTTTCTCCCAGACTGTGGGGATGAACCTGGCTGGATTCTTTAAGGCCTGGGGCTGGCCCATACAAACAGTCACTGAGGAGAAACTCTCCAACCTGCCTCCCTGGACTGACCACCCGATGGTCCAGTATGACTGAACTTCAGACTGCTGCTGGTTAAAAGTGCAGAGAGATGGGTTCAATAAGCCAATTATTGACGTTGAGTATTTAGTGGGTAATTCAATtaactgactttttttgtgctttttttgtttgttgtatttttaccATGCAATATTTGAAGAATAAACAGGAGTTGCATAGTTGACCATATATATACAGCTTTTACATTCAGAAGCTCCTTTGAAAACAGGGTTGTATTTGTTAAATACTTTAAAACCAAAGACACAAAATACCAAGAGGTCATTAAATTAACATAACTGTTACCAGGTGGGCTATACTTGTATTTAGAAGATTTTGAAGAGTTAGAAAAACATTGAAGCATTAAGCACAATGGggaattatttaatttatagtaatttgttggaaaaaaagggttctGTTTCAGGGTTAAAACAACATGATCTCTGATATTTGGATGTCTGAATTAGTAAGCTGCATCTTTCCCTGGTACTGTGGTACATAATTTGCTCTAAAGCTCTTCACTACAATGATATTTCCCTTTACTGTCAATggaaaatacattaataaacaatTAATTCACTGCTCTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24895 lncRNA downstream 57813 19851904 ~ 19856310 (-) True G18216
XR_005637280.1 lncRNA downstream 158130 19754887 ~ 19755993 (-) True LOC120548779
TU24875 lncRNA downstream 196838 19701228 ~ 19717285 (-) False fbxo46
TU24860 lncRNA downstream 264471 19649216 ~ 19649652 (-) True G18184
TU24852 lncRNA downstream 285483 19625403 ~ 19628640 (-) True G18179
TU25072 lncRNA upstream 128464 20053220 ~ 20054134 (-) True G18329
TU25089 lncRNA upstream 191529 20116285 ~ 20119606 (-) True G18337
TU25122 lncRNA upstream 260055 20184811 ~ 20258055 (-) True G18366
TU25123 lncRNA upstream 268124 20192880 ~ 20205688 (-) True G18367
TU25139 lncRNA upstream 781765 20706521 ~ 20706785 (-) True G18381
XM_039825895.1 mRNA downstream 7972 19892542 ~ 19906151 (-) False LOC120575210
XM_039825903.1 mRNA downstream 7972 19892542 ~ 19906151 (-) True LOC120575210
XM_039825868.1 mRNA downstream 22168 19872479 ~ 19891955 (-) True LOC120575197
XM_039787058.1 mRNA downstream 104094 19800751 ~ 19810029 (-) True si:ch211-11n16.2
XM_039779212.1 mRNA downstream 196816 19701227 ~ 19717307 (-) True fbxo46
XM_039825954.1 mRNA upstream 8737 19933493 ~ 19940419 (-) True si:ch1073-280e3.1
XM_039826021.1 mRNA upstream 24462 19949218 ~ 19953810 (-) True nudt8
XM_039826030.1 mRNA upstream 65963 19990719 ~ 20009181 (-) True pcsk7
XM_039826050.1 mRNA upstream 86374 20011130 ~ 20023355 (-) True bace1
XM_039787131.1 mRNA upstream 99091 20023847 ~ 20027797 (-) True LOC120550005
XR_005637451.1 other downstream 103993 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 1691269 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 1762155 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 2435279 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 2983129 16848161 ~ 16930994 (-) True G17597
TU25100 other upstream 212586 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 1169426 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 1322083 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 1739339 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 2077148 22001904 ~ 22007171 (-) False LOC120551419

Expression Profile