RNA id: XM_039825954.1


Basic Information

Item Value
RNA id XM_039825954.1
length 2669
RNA type mRNA
GC content 0.49
exon number 19
gene id si:ch1073-280e3.1
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 19933493 ~ 19940419 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTAATCAGTCATCAAATAAAGCAGCTGACTGCAGGTTGATACAGACactctcgctttgttttctgtcACTCAAAGACACAAATACCACTGATACAGACTCTGGTCATGTATGTCAAACCCATACTATGGATCCTACTCTTCACCTCTGTCCAGGAGGTGTCTCCGCAGGACTATAATTATGAAGATGAAACATACGAGGACCCACAGCCTCTGAACTGCTCAACCACAGAGAGCATCAAAGGTGGACATGTCACCTACTCACAGGGGGGGCTGGAAGGCAGCATGCTGACCTATCACTGCGGCCCGGGCCGATACCCTTACCCTGTCAGCCACAGGCTCTGCAGTGCTGACGGGGAGTGGTCGCCCATGAGATTAACCACTGGCAGACTGATGTCACGGGCCACATGCAAAGATGTGTTGTGTCCGGCTCAGCTCCAACTGGATCATGGTGACTTCTGGCCCAGGGACCAGTGGTCCCGTGTTGGGACAACGCAGAGCTTCTCCTGCCAGGAAGGGTTCACCCTGTATGGGTCCGCCCAGAGGAACTGCACCCTCTCTGGGGAGTGGACAGGAACCACTCCCGTCTGTGACAACCATGCTGACGACTGTAGTGACCCAGGGATCCCACCCGGGGCCCTGAGAACAGCAGGCCGGTTTCACACAGGAGAGGAGGTGATCTACCGGTGTCAGGTTGGTCTGGATCTTCTTGGGTCGGCTGAAAGGGTTTGCCTGGAGAGCAGGGAGTGGAGCGGTTCAACACCACGGTGCCAAGGCCCAAATACCTTTGACTCCCCCAGTGTTGTGGCAGCAGCCATGGCGGGGTCACTTGCAGGAGTCATGGATGTACTCTCACCAGACTCCAAAAAGAAAGgtggAGATATGTCCTTTGGCAGAACGTTTCGTGTGGCTGAAGGCAGTCGTATGAATGTCTACATTTTACTGGACACATCAGGAAGCATCGAAAAGAAGGACTTTGAATTATCCAGGAGTGCCACCATTGCTCTCATCAGAAAGTTGGACAGCTACGAGGTACAGCTCAAATTTCACGTGGTGTCATTTGCCACCGAGGCTAAAGACATTGTTGACATCACAGACTCGGGTATAAGTGGTAGCATCGACAACGTCATATGGAATCTGGAGCAGTTTAACTACAATAGCCATGGGCGCAAGACGGGCACCAACCTCCACGCTGCCCTGCACCGTGTCAGTGAGGTGATCAGCTTCTTGAAGCAAAACAGCGCCAAGAACCATTTTAATGAGACTCAGAACATCATCATCATAGAAACAGAtgGTTACTCCAACACAGGCAACAAGCCTCAGATTGCTCTGGCCAAGATCCGGAATCTGCTGGGCTACCACAACACATCCCGCGATCACACAGATGAAACAATGCTGGATGTCTATGTATTTGGTATTGGGAATGAAGTGAAGAAAGATGAGTTGAACTCTTTAGCCTCACAAAAACGTGGTGAGGAGCACATCTTCGTTTTGAAAAACTTTGAAATACTGGGACAGATGTTCAACAGCATCATTAGTGACAAGGGTGTGACGATGTGTGGGGTAGCTCAGGAAATGGTGGAGGATAATTCAGCCTACACGAGACCCTGGCACGTCACTCTGAAACCGGACACAAAGGCCACAAAGGCTACGCCGTGTGTTGGATCCATTGTGAGCCAGAACTGGGTGCTGACAGCTGCTCACTGCTTTGCCAGAGCGAGCACAGAAGTCCCTCAGCAGGTGGAGATACGTCACGGTGCGGGCTCATTGGTTCCCAAGAGGGTAATCATGCACCCAAAGTACAACACTAGGGCACTCAAACACAGAAATGTATCAGAGTTCTATGACTACGATGTAGCTCTGGTACAGGTGAACAAGAGTATCCCACTCTCCTGGAAAGCCAGACCTATCTGCTTGCCATGTACTGTACCAGCCAGCCGAGCCATGAAAAGAGTCAACTCCACCTGTCAGCAGCACAGGGATGAGCTACTACCGCACCAGGAGACTCCTGCCTTTTTCATCCATAAGAACTCTCAAAGGAAACAAACACATATTCAAGAGAGTCAAAGGCCTAGCTGTGTGGAGAAGGCCAGGCAAACACTCAAAGAGCCCACAGATGTAACTTTGGATGAGTATGTACCTGACAGATTCCTCTGTTCGGGGGGATCCTCAGCACACAAATACGCAATCACCTGTAAAGGTGACTCTGGTGGATCCTTGTTTCTgcaaaaaagaaatcgctaCTTTCAGGTGGGAGTTGTGAGCTGGGGCACCACGGACGTGTGTGACCCAGTCAACTCAGCTCTGAGAAAATACAGCAGCGACAAGCCGCCTCCTGATGCTCGAGACTTTCACATCGACCTGTTCAAGATAATGCCGTGGCTTAAAGAGCACCTGGGTGGGGAGATCCAGTTCCTGTCTGAGATCGACTGAGAACATCCATAATCAATCAGCTGAGAACTGCTTAGGTTAAGCCACAATGACTTAATGCAGAATGCAATAGAGCACAAGTGGAAATAATCATAGACAATCATACACAGTAATATCAAGTGTTTTCTAAAGCTTTATTGTCAAATGGATACTGTTGATTTTTATAGCTGTGGTGCAGTAAACACACTTGTAAAGGAAGATGCTTTGTCATACACAACATAAAAAGTAATTCTTCTTGTT

Function

GO: NA

KEGG:

id description
K01332 C2; complement component 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24895 lncRNA downstream 77183 19851904 ~ 19856310 (-) True G18216
XR_005637280.1 lncRNA downstream 177500 19754887 ~ 19755993 (-) True LOC120548779
TU24875 lncRNA downstream 216208 19701228 ~ 19717285 (-) False fbxo46
TU24860 lncRNA downstream 283841 19649216 ~ 19649652 (-) True G18184
TU24852 lncRNA downstream 304853 19625403 ~ 19628640 (-) True G18179
TU25072 lncRNA upstream 112801 20053220 ~ 20054134 (-) True G18329
TU25089 lncRNA upstream 175866 20116285 ~ 20119606 (-) True G18337
TU25122 lncRNA upstream 244392 20184811 ~ 20258055 (-) True G18366
TU25123 lncRNA upstream 252461 20192880 ~ 20205688 (-) True G18367
TU25139 lncRNA upstream 766102 20706521 ~ 20706785 (-) True G18381
XM_039825941.1 mRNA downstream 8392 19914123 ~ 19925101 (-) False LOC120575221
XM_039825925.1 mRNA downstream 8392 19914123 ~ 19925101 (-) True LOC120575221
XM_039825909.1 mRNA downstream 8660 19914123 ~ 19924833 (-) False LOC120575221
XM_039825933.1 mRNA downstream 8692 19914123 ~ 19924801 (-) False LOC120575221
XM_039825917.1 mRNA downstream 8737 19914123 ~ 19924756 (-) False LOC120575221
XM_039826021.1 mRNA upstream 8799 19949218 ~ 19953810 (-) True nudt8
XM_039826030.1 mRNA upstream 50300 19990719 ~ 20009181 (-) True pcsk7
XM_039826050.1 mRNA upstream 70711 20011130 ~ 20023355 (-) True bace1
XM_039787131.1 mRNA upstream 83428 20023847 ~ 20027797 (-) True LOC120550005
XM_039787132.1 mRNA upstream 87922 20028341 ~ 20030788 (-) True LOC120550021
XR_005637451.1 other downstream 123363 19802713 ~ 19810130 (-) False si:ch211-11n16.2
TU24394 other downstream 1710639 18205582 ~ 18222854 (-) False LOC120545639
TU24398 other downstream 1781525 18132087 ~ 18151968 (-) False zgc:165508
TU24264 other downstream 2454649 17473736 ~ 17478844 (-) False xaf1
TU24093 other downstream 3002499 16848161 ~ 16930994 (-) True G17597
TU25100 other upstream 196923 20137342 ~ 20141512 (-) False LOC120547993
TU25187 other upstream 1153763 21094182 ~ 21097201 (-) True si:ch1073-340i21.1
TU25281 other upstream 1306420 21246839 ~ 21261923 (-) False slc6a4a
TU25499 other upstream 1723676 21664095 ~ 21671479 (-) False gdpd5b
TU25608 other upstream 2061485 22001904 ~ 22007171 (-) False LOC120551419

Expression Profile