RNA id: XM_039826347.1


Basic Information

Item Value
RNA id XM_039826347.1
length 4012
RNA type mRNA
GC content 0.42
exon number 4
gene id efhd1
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 42992791 ~ 43063245 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTACTGCTTTCTCTCTTGTGAGCGGACCATAGGCAGTTTGACAGTGGTACTTGAAACCTATGCTTGAAACGGCTGTCAAGGCTCCATTCTCTCTAACGTTGTACGACTCAGTGAACAGCGTACTACTCGTAGCATGGCATCTGAAGAGCTGGCTAGGAAGCTGCAGTCGCGGCTGACCACTTCGCAGGAGGCTGAGCCGAGGCCGGAGCGCGAACAGAGCCCGGTCCGACCCAAACCGCAGGAGGCCGAGGCAGCCTGCGGCGACTCGTCCTCCGAGCTGTCTGCCAAACTGACCCGCAGACAGGACATCAACGAGGGCAACGCTGCTCCTCGACTGACCCGCATCTTCAACCCCTACACGGAGTTCAAGGAGTTCTCCCGCAAGCAGATTAAGGACATGGAGATGATGTTCAAACAGTACGACACTGGTAAAGACGGCTTCATCGACCTGATGGAGCTTAAGCTGATGATGGAGAAGCTGGGCGCTCCACAGACCCACCTGGGCCTCAAGAACATGATCAGAGAGGTGGACGAAGATTTTGATGGCAAGCTGAGCTTCCGAGAGTTCCTGCTGATTTTCCggagagcagcagctggagagctgcaggaagagaGTGGTCTGATGGCTCTGGCCAGGCTGTCGGAGATCAACGTCTCCACTGAGGGAGTGATGGGGGCCAAAGACTTCTTCGAAGCCAagATGCAGGCTCTGTCTCTGGGCAGCAAATTTGAGGCTGAGATtctagaagaaaaagaagaacgcaagagacaggaagtggagaaaaaacagagacaagCGGCCTTCAAGCAGCTGCAGTCAGCCTTCTGCTCCTGACCCTCCACAGATACCAACCCTGACAGGCACACGTCTCGGTCCACTGAGTCAGCACTTCTCATTCCACTTACACTTTAATCAATTGCATTGCTCAGAATTTGGGATATTATAACAAAACTAGAAAGAAGCATTGAAGTAAATACTTtctaaaatatttgaaaataccTTCAACCACTTAACAGGCAAGATTTATTCATTTCAGACTTTCTGCAGCTGTTCAACAGGAAACAACCAGGcaaacacacaggaaatgtTGAGTAATATCTCTAAATTCATGGAAATATCAGATTTATTGTGCATTTCTATGGAACTTCACTTTGTCTCCCTCTGTACAAGAACTGGAAGTTTTCACCTTGAGGGAATTTGACTTGTTTAGGTAAAGTTAAGCTGTATTCAGTCAGTACTGTTAACAACAGGTATTAAATGGGCTTATTTACAACCTGCAATGTAATAGAAATAGTATAGTAATAGATAATATAATGAATGAATAACTGTAGCataatattttaattattgtaGAATAAAATAGTGTGGAAATATTAGCCACTGACTTTGACTCCGTGTACTGATCCAACACTAAACAGGCTGTGCTCTGATGGCTTCCAtctatagtatatagtatgccACTTCTGATAATGATTTGATCCACATAAGGTGCACTCCCTGGTTTGGATATTCTGCCCCAAATCCCCACATGACCACTAAAACTCAACAGTGAAGTGTCAAGTTTCAAAATCAGGGAGGTTATTTTCAAAGGAGgacttcaacattttgggaaataggtTAATTTGATCAAAAGACTGATACCAAgctcatgtttgtgtgttaggTACACAGATGAAGTCAGGatgtggttagcctagcttagcataaagactagaagcagagaaaaacagctagcctggctaaaaGCTGTCCAACAACCCCTCTAACACGGGGTTTACCCCCGCCGACTGGCGCTGCCTGCTTCCCCTCGGCGACCATGTTAACCAACGGTGCTGTTCACACAGGACGCCCCGCGCCATGCAGCTTCAAAAATGCCTCGCCATATAGCAGTCATTATGGCGTCTGGTCTATTTTTACCACATTTTTAAATGATATAGAAGGCATATTATAGATGATATAAATCTTCTGCCCCTCTCCTGCTGTTCTCAAGTTTCAATTCCCCAGATTTTTACATGATAAAATATCAAAACCTGCCCATGCTCTAGATTTACTCAGAAATAGCCTTGTGTCACTGCTGTATGTGActgtgctttttgttttttttatgacgtAGGCAACTAGGCACGCATGCACGCAATTTCTTAGTTTCATGAAATGAACAAGATGTAACATGTGAGCGTTAGATGTTTTGGTTGGTGCATGTTTtttcctttggacagagccaggctagctgtttcccccagcttccagtctttatgctaaactaggCTAACAACGGCCTGActccagctcacttcatctactctcagaaagaaagcaaatagaTCTATTTTCCAAATATCTTTAAtaattcctttaaatgtttattCTATGTCTAAACCAAGGTGAACCACAGCAGACTGAAGACTTTAAACTGCATTAGTAAAAGCACACATTAAAAATTTAAGCATGCTTACATGTTGTACCAGGGTTTCTCAACCCTCACTTGGCTTGTGATTCTATTTTTAGGATCTAAATTGTCATGACCTCTCCAACTGCACAGGTAATACTTTGTCATGTGCATTTAAGTGTGGTGTATGTCTCTGTTTTTCATAGCATGCAATGCATGCAGTGCAAGTGTCTTATTTAGGCTAGATATTgtgatacattttaaatcatCAGTTTAGCTTATTTCCCATGTAAAACAGATCAGAATTAGAAATCTCATGCACTCCTGTATGCATAACAAATGAGTGAAGCGGGTCACCTCTGCACCAGAGTAGACCTGCACTCCTGTCGCTATGATAAGTGACAGTGTCTCTGGAATGGTTCTCCATCAGTCTGCTTGAGTCTGTGTGGATCCACAACACCAAATGAATGCTCTGCAATGTTTgaatcatttctttaaaactgACGCTTTCATGGCTTACACACTGTAACATAAGAAATTAGTCTAATTTGTAGCTTTTCAGAGTGTATGTAGCGAGAGGTACTCCAGggatttagtattgcactttcATAAAGTTAAGGAACTGCAAGAGACAGATTTTAAAAGTCTTGTCAATCTCCCAAAACACAGGCTCCTACAATCCCCATAATGCAATCCTAGATCTAATCTTTGATTGGACACTGCCGTCCTCCTGCTGGgagcatggaaaataaaaaataaacaaaatacaccTACCAACACCTTTTAAAGCTTACACAAACATTTCTGTTTAGTTGCTCTTTTTGTGCAAACATAACTATGTTAaacacattttgtgtttttttttattttaggggAGTGACTCCCCAACTGTGGGGTGCAACCACTCTGGGTGCTGCTGGGTTTTTTCTTGACATCTAGTGTTCAATGTTACTAAAGAAGGGAAAGTGTCACAAATATACAACACATCTTTAATATGCCAAACCTAAATAATCCATGTAAAGAAGGCATATCCGTGTCCAGAACCTGCTCTTTCCTCCACCTGACCGCAGCCTGTGTCAGGATTTGTAAGTCTTGGGACAGGAGTGCATTTGGGCTTGATATAGAGATGGAAGGCTGACAAATTCTGGCAAAGGCAGCAGTCATGTGCCATATACAAGCTCCATTCCTAACTCCTAAACACTAATTCCTAAACACAAGTGTTTGATAACTTTGGTGTCATTTGAATTTTGGAACCTAAAAATGGAGTCACAGGCCTGAAAAAGCTGAACCACTGACCTAAGCGGTGCTTGAAGTGCAGTTTATGTATCTGGCCCTCTTTTTTTTAGCTCTAGTAATGTATTTAAGTTGTAGCACGTTCAAGTTGTCATATAACAAAACTACTGTGCATATCACATCCCTTCTTTTGTATTTGTTGTGGAAATTGACAATGTATTTTTTCATAGATAAAATAGTATATATTGTTATTTGTTTTAGCAGAAACTTAACATGAAAAAGGTCAGTGAAATATATTTTTGGGCACTTGTAAAGATATTGTGTTGTTATATTCCCTGTCAGATGGAAGTTTAATTTGATTGcaataaagtataaataataAGAAATA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23921 EFHD1; EF-hand domain-containing family member D1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31773 lncRNA downstream 3027 42989474 ~ 42989764 (-) True G23497
TU31766 lncRNA downstream 10651 42981855 ~ 42982140 (-) True G23490
TU31762 lncRNA downstream 12904 42979662 ~ 42979887 (-) True G23486
TU31749 lncRNA downstream 57985 42934333 ~ 42934806 (-) True G23473
TU31746 lncRNA downstream 65342 42927152 ~ 42927449 (-) True G23470
TU31817 lncRNA upstream 25573 43088818 ~ 43097018 (-) True G23537
TU31820 lncRNA upstream 66294 43129539 ~ 43150971 (-) True G23540
TU31860 lncRNA upstream 288046 43351291 ~ 43351591 (-) True G23579
TU31862 lncRNA upstream 291055 43354300 ~ 43354522 (-) True G23581
TU31872 lncRNA upstream 303612 43366857 ~ 43367080 (-) True G23591
XM_039786068.1 mRNA downstream 82054 42904813 ~ 42910737 (-) True LOC120549271
XM_039791142.1 mRNA downstream 224225 42739636 ~ 42768566 (-) True gal3st2
XM_039791086.1 mRNA downstream 370831 42393288 ~ 42621960 (-) False fat3a
XM_039824045.1 mRNA upstream 179309 43242554 ~ 43346673 (-) False LOC120574039
XM_039792056.1 mRNA upstream 317881 43381126 ~ 43383213 (-) True LOC120553532
XM_039819073.1 mRNA upstream 503335 43566580 ~ 43578411 (-) True LOC120570616
XM_039791810.1 mRNA upstream 651037 43714282 ~ 43716741 (-) False LOC120553425
XM_039791633.1 mRNA upstream 706821 43770066 ~ 43789435 (-) False smco4
unassigned_transcript_105 other downstream 1960913 41031806 ~ 41031878 (-) True trnak-uuu_7
TU31014 other downstream 2959635 40025882 ~ 40033156 (-) False LOC120546248
XR_005641089.1 other downstream 4256968 38728941 ~ 38735823 (-) False LOC120570635
TU30601 other downstream 4629103 38353060 ~ 38363688 (-) False robo2
XR_005637810.1 other downstream 5246521 37734865 ~ 37746270 (-) False p4ha3
XR_005641814.1 other upstream 173437 43236682 ~ 43346673 (-) True LOC120574039
XR_005641815.1 other upstream 173437 43236682 ~ 43346664 (-) False LOC120574039
unassigned_transcript_106 other upstream 464609 43527854 ~ 43527925 (-) True trnaa-ugc
unassigned_transcript_107 other upstream 464944 43528189 ~ 43528260 (-) True trnag-ucc_1
unassigned_transcript_108 other upstream 465191 43528436 ~ 43528517 (-) True trnas-aga_1

Expression Profile