RNA id: XR_005636434.1



Basic Information


Item Value
RNA id XR_005636434.1
length 495
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id LOC120544059
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9019077 ~ 9019842 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGCTACTCGATAGCACATAGGGCTGAAATCAACCATGATAAAAGGCCGTGTGCTTCTCTAAACCTCTCTGTGAAAGCTGCTACCCCTAAAAACGTTCACCATCGTAAGCATAAGAAGCAATTTATTGAGCCTGAGCCATACCAGAAAGGCTTCCCGCCCAAAAGACGCAACCATTCCTTTGTTCCGGTTTCATCTTACCCGgccactgtatcttatgatcctaacacagttgcagagcAACTAAAGGCTACGGAAGACTTAGTTTCATTGTATTTGACGCCTGAGGACGATTTCACACAGCCACCCCCATGGAGCAGAAACGGATGTCTACACAAGCCTAAGAAGGGATCTAAGAAGAGATCTATTGAgCCTGAGCCATACCAGAAAGGCTTCCCGCCCAAAAGACGCAACCATTCCTTTGTTCCGGTCTCATCTTACCCGgccactgtatcttatgatcctaacacagttgcagaggtgagaaacccttttgta

Function


GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21479 lncRNA downstream 35156 8981188 ~ 8983921 (-) True G15853
TU21480 lncRNA downstream 35156 8981188 ~ 8983921 (-) False G15853
TU21477 lncRNA downstream 48464 8969282 ~ 8970613 (-) True G15851
TU21457 lncRNA downstream 98260 8918024 ~ 8920817 (-) True G15836
XR_005636433.1 lncRNA downstream 122695 8894784 ~ 8896382 (-) False LOC120544051
TU21498 lncRNA upstream 13004 9032846 ~ 9036740 (-) True G15866
TU21501 lncRNA upstream 22441 9042283 ~ 9082554 (-) True G15867
TU21510 lncRNA upstream 81089 9100931 ~ 9105601 (-) True G15874
TU21511 lncRNA upstream 82001 9101843 ~ 9105601 (-) False G15874
TU21491 lncRNA upstream 111164 9131006 ~ 9210517 (-) False LOC120543625
XM_039777467.1 mRNA downstream 95711 8921436 ~ 8923366 (-) True LOC120543996
XM_039777012.1 mRNA downstream 104100 8880476 ~ 8914977 (-) True spint2
XM_039776983.1 mRNA downstream 139031 8849490 ~ 8880046 (-) False atg16l1
XM_039776975.1 mRNA downstream 139031 8849490 ~ 8880046 (-) True atg16l1
XM_039777139.1 mRNA downstream 177701 8828413 ~ 8841376 (-) True LOC120543840
XM_039776768.1 mRNA upstream 111142 9130984 ~ 9158835 (-) True LOC120543625
XM_039788278.1 mRNA upstream 176145 9195987 ~ 9201417 (-) True LOC120551100
XM_039777568.1 mRNA upstream 328367 9348209 ~ 9433655 (-) True eif2a
XM_039777530.1 mRNA upstream 468480 9488322 ~ 9502894 (-) True LOC120544027
XM_039788319.1 mRNA upstream 493634 9513476 ~ 9522231 (-) True LOC120551129
XR_005638456.1 other downstream 144457 8874341 ~ 8874620 (-) True LOC120554459
XR_005638457.1 other downstream 158437 8860361 ~ 8860640 (-) True LOC120554461
XR_005638459.1 other downstream 164485 8854312 ~ 8854592 (-) True LOC120554466
TU21363 other downstream 416187 8602072 ~ 8602890 (-) True G15771
TU21348 other downstream 549317 8468357 ~ 8469760 (-) True G15757
TU21489 other upstream 111697 9131539 ~ 9144120 (-) False LOC120543625
TU21546 other upstream 218125 9237967 ~ 9238784 (-) True G15903
TU21567 other upstream 411019 9430861 ~ 9433602 (-) False eif2a
TU21571 other upstream 493662 9513504 ~ 9517970 (-) False LOC120551129
XR_005638376.1 other upstream 612081 9631923 ~ 9632028 (-) True LOC120554346

Expression Profile