RNA id: XR_005636438.1


Basic Information

Item Value
RNA id XR_005636438.1
length 895
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC120544074
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8531244 ~ 8534741 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAGTCCTTAAACTTTCGGCCAGCATGTGACCTGAAGCTGGTCTCTAATTGGTTTCTTAAAGATTCTCCTCCGGACGCACCTCGCTGCGTCCCTGGCAAATCAGAATTGGAGATATGTTATTTTatccaatctgattggttctcAACACCTGTCATTCAACTCTTCCCCCGGCCGCTACTGGAGAGTGAACGTGGACACAATAGTAGCGCCAGCAGGTAGCTCCTGTGTTGTTGAAATGGTCTAACCACTTTGATTAAAGTAGGAAACTAGCAACAATAAACAAGGAGAGATTCTTGAAAGGGTGAAAGAGAAGTTATACAACGTCGTGGAGCTGCCGACCCCGTCCAAACGGCGTGTGAATTGAATATTCCGGCTGTTTTTTTGGTGAGACTCTACTAGAGACAGAACTGTGCTGCTCAAGTCACTGTCGTCATACTGCCTTCTGGGTTTCATCTTCATCACCACCATCTTCTTACCGCTCACTAGATCTTCGCCATCATCATCTCCACTACTCACAGGATTGTCCCGTCGTTTCCCTACTCCATTCTCTGAGGAGCCAGGATGGACAGTTTGACCTGCTAAGGGAGGTGctaaaatTTCTACTCTAAAAGCAGAGATCTCCTTGCTTAAAGATGAGTGTGACTTTTTGAAGAAGGGGATTGAAAAGATGAAGTCTGTTGTTCCAACTGCAGTGTCTCAAGTCCATGCTGATCCGACAGTGTCAGATTCTTCAGAACAGCAAGACTCGTGGGATTCCACCAGCTCCTCATCATCCTCGGAgaaagggaagaaaaagaagaaaaaaatgaagaaaccaaggaagagcaaaaaaaaaaggggggaaaaatgtTAACTTATGTCTATATCATTAAAATTGAAAAGTTCACAATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20928 lncRNA upstream 27090 8503817 ~ 8504154 (+) True G15487
XR_005636449.1 lncRNA upstream 47950 8482230 ~ 8483294 (+) True LOC120544094
TU20890 lncRNA upstream 52826 8478169 ~ 8478418 (+) True G15471
TU20880 lncRNA upstream 94506 8435932 ~ 8436738 (+) True G15461
TU20854 lncRNA upstream 167998 8362900 ~ 8363246 (+) True G15448
TU20893 lncRNA downstream 16850 8551591 ~ 8587437 (+) False LOC120543817
TU20941 lncRNA downstream 45130 8579871 ~ 8602270 (+) True G15497
TU20942 lncRNA downstream 51642 8586383 ~ 8596399 (+) True G15498
TU20943 lncRNA downstream 52536 8587277 ~ 8638423 (+) True G15499
TU20894 lncRNA downstream 86113 8620854 ~ 8621654 (+) False LOC120543817
XM_039776897.1 mRNA upstream 61484 8429225 ~ 8469760 (+) True LOC120543718
XM_039776949.1 mRNA upstream 108908 8399400 ~ 8422336 (+) True nyap2a
XM_039788241.1 mRNA upstream 224034 8244631 ~ 8307210 (+) True LOC120551081
XM_039777293.1 mRNA upstream 405575 8123625 ~ 8125669 (+) True LOC120543907
XM_039788213.1 mRNA upstream 412598 8115385 ~ 8118646 (+) True LOC120551067
XM_039777099.1 mRNA downstream 12877 8547618 ~ 8566587 (+) True rnf168
XM_039777085.1 mRNA downstream 46738 8581479 ~ 8621108 (+) True LOC120543817
XM_039777493.1 mRNA downstream 261619 8796360 ~ 8808975 (+) False LOC120544007
XM_039776753.1 mRNA downstream 501795 9036536 ~ 9078556 (+) True LOC120543609
XM_039777153.1 mRNA downstream 724336 9259077 ~ 9275432 (+) True mindy4b
TU20798 other upstream 358753 8170696 ~ 8172491 (+) True G15415
TU20801 other upstream 359469 8170696 ~ 8171775 (+) False G15415
TU20559 other upstream 687587 7833323 ~ 7843657 (+) False rffl
TU20560 other upstream 687587 7833478 ~ 7843657 (+) False rffl
TU20561 other upstream 687587 7836049 ~ 7843657 (+) False rffl
XR_005636425.1 other downstream 261329 8796070 ~ 8808829 (+) False LOC120544007
XR_005636426.1 other downstream 261329 8796070 ~ 8808770 (+) True LOC120544007
XR_005636424.1 other downstream 261343 8796084 ~ 8808829 (+) False LOC120544007
TU20986 other downstream 314760 8849501 ~ 8850871 (+) True G15525
TU21004 other downstream 391851 8926592 ~ 8930270 (+) True G15540

Expression Profile