RNA id: XR_005636449.1


Basic Information

Item Value
RNA id XR_005636449.1
length 521
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC120544094
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8482230 ~ 8483294 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGGTTTACAGGTAATTTGCATATGATTTGCATACTGTGAGAGACTGCACCTCCACAGGCATCCTCACAGATTACCTATATCTGCAATGGcttccacaagttcacctggaacctccaaatctaaGATATACAAGATCTTTTCTTGGAGGGGGACCATGACAGAGTGACAGAAGAGTCTGCCAGTGGAGTACTTTTACCACCCATCCAGTGCCCTCTGAGGCTACAGACTATGGCAGAACTGAGGGCAGCCATTTACCCTGTGACTAACTCCTAGTACAATGGCGGATAGCTTTGCAAGACTGCACTTAACTATGTGATTCTTCACACATAAACATGGCAGGATAACACAGGAAAAccattttgttgtttaaaatgaCACATACCACTACTACTTTATATGTAGTACTGATTTTAATCCTTAACAGTTTTTGAAATaacatgcatttacagtatggaCTCCAGCAAAACAGTTAAATCTGTACCTTTTCAatgaataacaaataaatatattcaagtAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20890 lncRNA upstream 3812 8478169 ~ 8478418 (+) True G15471
TU20880 lncRNA upstream 45492 8435932 ~ 8436738 (+) True G15461
TU20854 lncRNA upstream 118984 8362900 ~ 8363246 (+) True G15448
TU20853 lncRNA upstream 128132 8353728 ~ 8354098 (+) True G15447
TU20851 lncRNA upstream 147752 8334185 ~ 8334478 (+) True G15445
TU20928 lncRNA downstream 20523 8503817 ~ 8504154 (+) True G15487
TU20933 lncRNA downstream 29361 8512655 ~ 8702189 (+) True G15491
XR_005636438.1 lncRNA downstream 47950 8531244 ~ 8534741 (+) True LOC120544074
XR_005636439.1 lncRNA downstream 47950 8531244 ~ 8534741 (+) False LOC120544074
TU20893 lncRNA downstream 68297 8551591 ~ 8587437 (+) False LOC120543817
XM_039776897.1 mRNA upstream 12470 8429225 ~ 8469760 (+) True LOC120543718
XM_039776949.1 mRNA upstream 59894 8399400 ~ 8422336 (+) True nyap2a
XM_039788241.1 mRNA upstream 175020 8244631 ~ 8307210 (+) True LOC120551081
XM_039777293.1 mRNA upstream 356561 8123625 ~ 8125669 (+) True LOC120543907
XM_039788213.1 mRNA upstream 363584 8115385 ~ 8118646 (+) True LOC120551067
XM_039777099.1 mRNA downstream 64324 8547618 ~ 8566587 (+) True rnf168
XM_039777085.1 mRNA downstream 98185 8581479 ~ 8621108 (+) True LOC120543817
XM_039777493.1 mRNA downstream 313066 8796360 ~ 8808975 (+) False LOC120544007
XM_039776753.1 mRNA downstream 553242 9036536 ~ 9078556 (+) True LOC120543609
XM_039777153.1 mRNA downstream 775783 9259077 ~ 9275432 (+) True mindy4b
TU20798 other upstream 309739 8170696 ~ 8172491 (+) True G15415
TU20801 other upstream 310455 8170696 ~ 8171775 (+) False G15415
TU20559 other upstream 638573 7833323 ~ 7843657 (+) False rffl
TU20560 other upstream 638573 7833478 ~ 7843657 (+) False rffl
TU20561 other upstream 638573 7836049 ~ 7843657 (+) False rffl
XR_005636425.1 other downstream 312776 8796070 ~ 8808829 (+) False LOC120544007
XR_005636426.1 other downstream 312776 8796070 ~ 8808770 (+) True LOC120544007
XR_005636424.1 other downstream 312790 8796084 ~ 8808829 (+) False LOC120544007
TU20986 other downstream 366207 8849501 ~ 8850871 (+) True G15525
TU21004 other downstream 443298 8926592 ~ 8930270 (+) True G15540

Expression Profile