RNA id: XR_005637394.1


Basic Information

Item Value
RNA id XR_005637394.1
length 1673
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC120549487
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 43801220 ~ 43803888 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATAAATTTGTTCCAAGACAAAACCCCTGTCCCCTACCAGGAGTCAGGGACCTCAGGACTGGAGAAGGAACTTCAGgacatggaggaggagagggagtttATCGTGAGGCTGCAAAATACACCAGAGAAGGCCTGAGAAGTCTCGTGAACACGCCAGTGTGCTTCAACCTGACTTGTGTGGTGGGAAACGTCTTCAGGCACACGGGAATCACcggaaaataagttttgtttttaattctttGCTTTTGTATGAGCCGGATTATACAGTACATCTACCAAACGTAttatgaataaaacaacatggatATTCCATTACTATGGGTTCTTACCGACATTTCAGAACCATTTATGATgggtcgggatattgccatccTTGTGTAACCCAGACTAAAAGGTACACAGGCATGGATTCACGAGGGAGTGGAGGGGggcattttatagcattttgatAAGATGCATAGTGATATTAATCAAATACAgtaatgcacacaaaaaaattcTATGGTTtctatgggagaaaaacaaacattatgtacATTAGCCATGCCCTACAGGAATTGGGATTTTGTAtgttgatacattttgaaaccaCTTCAATACATGATGTATGTTCTAATGTCTAAGTTttacataaattaaataatttgcaCATATATCTATGTGTATGTTGTCAGTCATTTACATTTAGGTTGAAATTGAGTGATGCTTGACATTGAAATTATAGCACGCTAAAACGTAGCTAACATTGATTTAGCTAGCTCGGTTTAAGGAGATGTTTATGAATAAAACGTTACTAACGATAGCTAATCCACTGACCGTTGGTAACGCACGGACATTGTTATTATTGGATATTTCCTTGCTGAAAAGTGAACATGCAGAAAAAGGAGGAACATTTTTATTCAGCTAGCTATCATGTAGCCTATTTTGAATGCTCAGGTTTCCATATTGcatgtatttttaattgtttgtgtAGCGTTAACCAAAAGTTATgtattaagtacagtactttatgtagttccttttaaataaaaaatgaaaaaatgtaatGCTGACAAATCGCCGGTTCCCGCCCGGGGCTGTGGTGTACACTCTGATATAAACAACTCCCTGGAAGTTATCTatgtaaatttatttttaaggatGAATATACAGAACAAATTTGTAGAGTAGATTACACTCGTTTTTAAAGGAGGGAATTTTGGACagtcaagaaaaaaaatctattgtttttttttttaggtataaCCTTTTACATAAATTTGTTCCGAGAAAAAAACCCTGTCCCCTACCAGGAGTCAGGGACCTCAGGACTGGAGAAGGAACTTCAGgacatggaggaggagagggagtttATCGCGAGGCTGCAAAATACACCAGAGAAGGCCCGAGAAGTCTCGTGAACACGCCAGTGTGCTTCAACCTGACTTGTGTGGTGGGAAACGTCTTCAGGCACACGGGAATCACcggaaaataagttttgtttttaattctttctttttgtatGAGCCGGATTATACAGTACATCTACCAAACGTAtcatgaataaaacaacatggatATTCCATTACTATGGGTTCTTACCGACATTTCAGAACCATTTATGATGGGTTGGGATATTGCCATCCTTGTGTAACCCAGACTAAAAGGTACACAGGCATGGATTCACGAGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32081 lncRNA downstream 11810 43770618 ~ 43789410 (-) False smco4
TU32075 lncRNA downstream 11810 43770724 ~ 43789410 (-) False smco4
TU32080 lncRNA downstream 11810 43770724 ~ 43789410 (-) False smco4
TU32046 lncRNA downstream 87643 43713342 ~ 43713577 (-) True G23730
TU32044 lncRNA downstream 90112 43710552 ~ 43711108 (-) True G23728
TU32092 lncRNA upstream 19994 43823067 ~ 43823415 (-) True G23759
TU32140 lncRNA upstream 334299 44137372 ~ 44137752 (-) True G23799
TU32160 lncRNA upstream 419139 44222212 ~ 44226476 (-) False G23811
TU32162 lncRNA upstream 419139 44222212 ~ 44226539 (-) True G23811
TU32268 lncRNA upstream 971132 44774205 ~ 44774439 (-) True G23906
XM_039791633.1 mRNA downstream 11785 43770066 ~ 43789435 (-) False smco4
XM_039791613.1 mRNA downstream 11785 43770066 ~ 43789435 (-) True smco4
XM_039791622.1 mRNA downstream 11789 43770066 ~ 43789431 (-) False smco4
XM_039791810.1 mRNA downstream 84479 43714282 ~ 43716741 (-) False LOC120553425
XM_039819073.1 mRNA downstream 222809 43566580 ~ 43578411 (-) True LOC120570616
XM_039824982.1 mRNA upstream 280012 44083085 ~ 44087251 (-) True omgb
XM_039824969.1 mRNA upstream 291775 44094848 ~ 44098473 (-) True LOC120574562
XM_039824994.1 mRNA upstream 295890 44098963 ~ 44114071 (-) False LOC120574575
XM_039825002.1 mRNA upstream 295890 44098963 ~ 44114071 (-) True LOC120574575
XM_039789460.1 mRNA upstream 934788 44737861 ~ 44739433 (-) True LOC120551889
XR_005638163.1 other downstream 84479 43701232 ~ 43716741 (-) True LOC120553425
TU32041 other downstream 99923 43700971 ~ 43701297 (-) False LOC120553425
unassigned_transcript_121 other downstream 262107 43539042 ~ 43539113 (-) True trnag-ucc_6
unassigned_transcript_120 other downstream 263048 43538091 ~ 43538172 (-) True trnas-aga_5
unassigned_transcript_119 other downstream 263638 43537511 ~ 43537582 (-) True trnaa-ugc_4
XR_005637812.1 other upstream 1013842 44816915 ~ 44824993 (-) False mrps23
unassigned_transcript_122 other upstream 1107754 44910827 ~ 44910898 (-) True trnah-gug
unassigned_transcript_123 other upstream 1108783 44911856 ~ 44911928 (-) True trnar-acg_1
unassigned_transcript_124 other upstream 1109082 44912155 ~ 44912226 (-) True trnah-gug_1
unassigned_transcript_125 other upstream 1110118 44913191 ~ 44913263 (-) True trnar-acg_2

Expression Profile