RNA id: XR_005637445.1


Basic Information

Item Value
RNA id XR_005637445.1
length 317
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC120549843
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 15713132 ~ 15714089 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGGAGGAGAGCTATAAAAGTTAGTGAGTAAGAGTCCTTCCAACAGAACGAGGACCAGgagctactactactactactactactactactactactacagATAACTGTTCAGGTTCAGTCTGGTGTTCAGCAGTCAGAATGATGACTCCCGCTCTCCTCTCTGTGGCCTTGCTGCTGTTGCTTCTTCCTGGGGTTCCATCTGCAGATCCCACTCTATATCCCATCAGTGTCCTGGTGAAAAACTCTGTAAACCACAGTCCCAATAAGACCTACAGCACTTCTGTGGTTTACAGAGGAATCTTGCGTGGGGAGACCG

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko00910 Nitrogen metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23562 lncRNA downstream 62132 15646740 ~ 15651000 (-) False lyrm9
TU23563 lncRNA downstream 62132 15646740 ~ 15651000 (-) False lyrm9
TU23557 lncRNA downstream 70142 15642003 ~ 15642990 (-) True G17264
TU23545 lncRNA downstream 177905 15533876 ~ 15535227 (-) True G17253
TU23515 lncRNA downstream 271622 15434214 ~ 15441510 (-) True G17225
TU23748 lncRNA upstream 302833 16016922 ~ 16048016 (-) True G17389
TU23849 lncRNA upstream 686534 16400623 ~ 16400836 (-) True G17466
TU23886 lncRNA upstream 703206 16417295 ~ 16418742 (-) True G17499
TU24024 lncRNA upstream 982724 16696813 ~ 16698009 (-) True G17571
TU24054 lncRNA upstream 996680 16710769 ~ 16766469 (-) True G17579
XM_039786956.1 mRNA downstream 6856 15702979 ~ 15706276 (-) True LOC120549813
XM_039786967.1 mRNA downstream 6863 15702979 ~ 15706269 (-) False LOC120549813
XM_039786977.1 mRNA downstream 6931 15702979 ~ 15706201 (-) False LOC120549813
XM_039786991.1 mRNA downstream 14679 15695804 ~ 15698453 (-) True LOC120549823
XM_039786999.1 mRNA downstream 14682 15695804 ~ 15698450 (-) False LOC120549823
XM_039792535.1 mRNA upstream 10068 15724157 ~ 15726157 (-) False LOC120553928
XM_039792538.1 mRNA upstream 10068 15724157 ~ 15726114 (-) False LOC120553928
XM_039792534.1 mRNA upstream 10068 15724157 ~ 15726114 (-) False LOC120553928
XM_039792537.1 mRNA upstream 10068 15724157 ~ 15725999 (-) True LOC120553928
XM_039784500.1 mRNA upstream 190800 15904889 ~ 16008065 (-) True sorl1
TU23599 other downstream 6677 15695554 ~ 15706455 (-) False G17287
XR_005641363.1 other downstream 387334 15318840 ~ 15325798 (-) True si:ch1073-145m9.1
TU23133 other downstream 1626368 14081963 ~ 14086764 (-) False gpr4
TU23022 other downstream 1890075 13816096 ~ 13823057 (-) False G16880
TU23000 other downstream 2005092 13701643 ~ 13708040 (-) True G16871
XR_005637173.1 other upstream 331919 16046008 ~ 16060408 (-) False sdhdb
XR_005637172.1 other upstream 335783 16049872 ~ 16060408 (-) False sdhdb
TU24093 other upstream 1134072 16848161 ~ 16930994 (-) True G17597
TU24264 other upstream 1759647 17473736 ~ 17478844 (-) False xaf1
TU24398 other upstream 2417998 18132087 ~ 18151968 (-) False zgc:165508

Expression Profile