RNA id: XR_005638383.1



Basic Information


Item Value
RNA id XR_005638383.1
length 110
RNA type snRNA
GC content 0.47
exon number 1
gene id LOC120554366
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 3279611 ~ 3279720 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gtgcttgctcaggcagcacatATGACAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCCCTGCGAAAGGATGACCACGCAAATTCGTGAAGCGTTACCACATTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU19185 lncRNA downstream 50987 3228075 ~ 3228624 (-) False LOC120570817
TU19189 lncRNA downstream 153398 3116707 ~ 3126213 (-) True G14383
TU18611 lncRNA downstream 294037 2985324 ~ 2985574 (-) True G13997
TU18594 lncRNA downstream 299266 2977860 ~ 2980345 (-) False G13984
XR_005641295.1 lncRNA upstream 122748 3402468 ~ 3410949 (-) True LOC120571770
TU19243 lncRNA upstream 193217 3472937 ~ 3476382 (-) False G14426
TU19305 lncRNA upstream 309769 3589489 ~ 3639043 (-) True G14469
TU19318 lncRNA upstream 410560 3690280 ~ 3690581 (-) True G14481
TU19261 lncRNA upstream 450880 3730600 ~ 3735025 (-) True G14428
XM_039819859.1 mRNA downstream 20703 3250172 ~ 3258908 (-) True LOC120571140
XM_039820150.1 mRNA downstream 40819 3063430 ~ 3238792 (-) True LOC120571282
XM_039819385.1 mRNA downstream 50787 3056729 ~ 3228824 (-) True LOC120570817
XM_039778723.1 mRNA upstream 79436 3359156 ~ 3362384 (-) True LOC120544814
XM_039778724.1 mRNA upstream 161389 3441109 ~ 3442316 (-) True LOC120544846
XM_039820196.1 mRNA upstream 162728 3442448 ~ 3443938 (-) True LOC120571310
XM_039778725.1 mRNA upstream 192760 3472480 ~ 3557562 (-) True LOC120544862
XM_039819291.1 mRNA upstream 290414 3570134 ~ 3587481 (-) True LOC120570764
XR_005638379.1 other downstream 1332 3278172 ~ 3278279 (-) True LOC120554359
XR_005638380.1 other downstream 2820 3276682 ~ 3276791 (-) True LOC120554360
XR_005638377.1 other downstream 4326 3275178 ~ 3275285 (-) True LOC120554353
XR_005638387.1 other downstream 5828 3273676 ~ 3273783 (-) True LOC120554376
TU18607 other downstream 295113 2981061 ~ 2984498 (-) True G13995
XR_005638408.1 other upstream 1387 3281107 ~ 3281217 (-) True LOC120554410
XR_005638384.1 other upstream 2892 3282612 ~ 3282719 (-) True LOC120554368
XR_005638392.1 other upstream 4395 3284115 ~ 3284224 (-) True LOC120554382
XR_005638368.1 other upstream 5895 3285615 ~ 3285721 (-) True LOC120554332
XR_005638385.1 other upstream 12481 3292201 ~ 3292304 (-) True LOC120554372