RNA id: XR_005638430.1


Basic Information

Item Value
RNA id XR_005638430.1
length 149
RNA type snoRNA
GC content 0.52
exon number 1
gene id LOC120554420
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11562256 ~ 11562404 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCGGTGATGATACGATGACGAGTCGGAACAGGACTCGGTCTGGTTCTGGTGGTTACTGGTTCAGGTCCACGTTCTGTGGTTCTGCTCCAGTTCTTCAGAGCAGCGAGTCCTCTTGGTTGAAGACATCGAGGCATTTGTCTGAGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21972 lncRNA upstream 26955 11535088 ~ 11535301 (+) True G16207
XR_005641426.1 lncRNA upstream 76186 11484612 ~ 11486070 (+) True LOC120572352
TU21959 lncRNA upstream 119997 11427476 ~ 11442259 (+) True LOC120552116
XR_005637959.1 lncRNA upstream 120172 11427476 ~ 11442084 (+) False LOC120552116
TU21957 lncRNA upstream 143375 11418614 ~ 11418881 (+) True G16192
TU22073 lncRNA downstream 126816 11689220 ~ 11771683 (+) True G16229
TU22079 lncRNA downstream 171994 11734398 ~ 11752981 (+) True G16235
TU22082 lncRNA downstream 191970 11754374 ~ 11812385 (+) True G16237
TU22096 lncRNA downstream 256476 11818880 ~ 11819272 (+) True G16250
TU22098 lncRNA downstream 256476 11818880 ~ 11819272 (+) False G16250
XM_039791660.1 mRNA upstream 21437 11535785 ~ 11540819 (+) True LOC120553334
XM_039788488.1 mRNA upstream 582827 10977205 ~ 10979429 (+) True LOC120551226
XM_039788464.1 mRNA upstream 1097903 10455757 ~ 10464353 (+) True LOC120551211
XM_039782670.1 mRNA upstream 1116767 10434486 ~ 10445489 (+) False LOC120547173
XM_039821761.1 mRNA downstream 2857 11565261 ~ 11573226 (+) True kctd14
XM_039787137.1 mRNA downstream 18042 11580446 ~ 11587261 (+) True LOC120550095
XM_039787165.1 mRNA downstream 30024 11592428 ~ 11613222 (+) True LOC120550461
XM_039787163.1 mRNA downstream 267408 11829812 ~ 11833364 (+) True ompa
XM_039788519.1 mRNA downstream 309524 11871928 ~ 11883024 (+) True LOC120551249
XR_005638440.1 other upstream 1717 11560391 ~ 11560539 (+) True LOC120554427
XR_005638451.1 other upstream 4656 11557452 ~ 11557600 (+) True LOC120554442
XR_005638446.1 other upstream 5801 11556307 ~ 11556455 (+) True LOC120554434
TU21270 other upstream 1558661 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 1596482 9960066 ~ 9965774 (+) False LOC120551195
TU22150 other downstream 332100 11894504 ~ 11900873 (+) True G16267
TU22453 other downstream 833591 12395995 ~ 12409274 (+) True G16467
TU22469 other downstream 889101 12451505 ~ 12456399 (+) False LOC120552034
XR_005638517.1 other downstream 1060393 12622797 ~ 12622987 (+) True LOC120554572
XR_005638490.1 other downstream 1068270 12630674 ~ 12630864 (+) True LOC120554522

Expression Profile