RNA id: XR_005638446.1


Basic Information

Item Value
RNA id XR_005638446.1
length 149
RNA type snoRNA
GC content 0.53
exon number 1
gene id LOC120554434
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 11556307 ~ 11556455 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCGGTGATGATACGATGACGAGTCGGAACAGGACTCACTCTGGTTCTGGTGGTTGCTGGTTCAGGTCCACGTTCTGTGGTTCTGCTCCAGTTCCTCAGAGCAGCGAGTCCTCATGGTTGAAGACATCGAGGCATTTGTCTGAGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21972 lncRNA upstream 21006 11535088 ~ 11535301 (+) True G16207
XR_005641426.1 lncRNA upstream 70237 11484612 ~ 11486070 (+) True LOC120572352
TU21959 lncRNA upstream 114048 11427476 ~ 11442259 (+) True LOC120552116
XR_005637959.1 lncRNA upstream 114223 11427476 ~ 11442084 (+) False LOC120552116
TU21957 lncRNA upstream 137426 11418614 ~ 11418881 (+) True G16192
TU22073 lncRNA downstream 132765 11689220 ~ 11771683 (+) True G16229
TU22079 lncRNA downstream 177943 11734398 ~ 11752981 (+) True G16235
TU22082 lncRNA downstream 197919 11754374 ~ 11812385 (+) True G16237
TU22096 lncRNA downstream 262425 11818880 ~ 11819272 (+) True G16250
TU22098 lncRNA downstream 262425 11818880 ~ 11819272 (+) False G16250
XM_039791660.1 mRNA upstream 15488 11535785 ~ 11540819 (+) True LOC120553334
XM_039788488.1 mRNA upstream 576878 10977205 ~ 10979429 (+) True LOC120551226
XM_039788464.1 mRNA upstream 1091954 10455757 ~ 10464353 (+) True LOC120551211
XM_039782658.1 mRNA upstream 1110818 10434485 ~ 10445489 (+) False LOC120547173
XM_039782652.1 mRNA upstream 1110818 10434486 ~ 10445489 (+) True LOC120547173
XM_039821761.1 mRNA downstream 8806 11565261 ~ 11573226 (+) True kctd14
XM_039787137.1 mRNA downstream 23991 11580446 ~ 11587261 (+) True LOC120550095
XM_039787165.1 mRNA downstream 35973 11592428 ~ 11613222 (+) True LOC120550461
XM_039787163.1 mRNA downstream 273357 11829812 ~ 11833364 (+) True ompa
XM_039788519.1 mRNA downstream 315473 11871928 ~ 11883024 (+) True LOC120551249
TU21270 other upstream 1552712 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 1590533 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 1590533 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 1611862 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 1671703 9884513 ~ 9884604 (+) True trnar-ucu_11
XR_005638451.1 other downstream 997 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 3936 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 5801 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 338049 11894504 ~ 11900873 (+) True G16267
TU22453 other downstream 839540 12395995 ~ 12409274 (+) True G16467

Expression Profile