RNA id: XR_005638456.1


Basic Information

Item Value
RNA id XR_005638456.1
length 280
RNA type guide_RNA
GC content 0.54
exon number 1
gene id LOC120554459
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8874341 ~ 8874620 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTCAATGATGAGCAGTAAAAGGTCTGATTACCCAGAATCCTCTCCTGCAGTCCTCTGGCTCCCAGCAGCCCATGCTCTGTTTTCCCATCATGCCCTAGTGGTGCAGTGGTGGTCTCAGCAGCTGCTGACAgacacaggaagtgacatcacagCGTGAGTCTGCACAGAGAGCCTGCAGGCTCAGTGTGATGATGACTCACTTCCAACAGAACCAATCAGAACGGAGCGTCAGGCCGAAGGGAGAGGAGGGACATGATCTCAAGTTTTCAACCTGAGACC

Function

GO:

id name namespace
GO:0006082 organic acid metabolic process biological_process
GO:0009069 serine family amino acid metabolic process biological_process
GO:0009070 serine family amino acid biosynthetic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process
GO:0006563 L-serine metabolic process biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21444 lncRNA downstream 72363 8801446 ~ 8801978 (-) True G15826
TU21432 lncRNA downstream 95799 8778030 ~ 8778542 (-) True G15819
TU21422 lncRNA downstream 123393 8750411 ~ 8750948 (-) True G15812
TU21419 lncRNA downstream 129995 8735489 ~ 8744346 (-) True G15809
TU21428 lncRNA upstream 5818 8880438 ~ 8912301 (-) False spint2
TU21453 lncRNA upstream 10236 8884856 ~ 8885515 (-) True G15832
XR_005636446.1 lncRNA upstream 11306 8885926 ~ 8886911 (-) True LOC120544086
XR_005636433.1 lncRNA upstream 20164 8894784 ~ 8896382 (-) False LOC120544051
XR_005636432.1 lncRNA upstream 20164 8894784 ~ 8896380 (-) True LOC120544051
XM_039777139.1 mRNA downstream 32965 8828413 ~ 8841376 (-) True LOC120543840
XM_039778440.1 mRNA downstream 132298 8692074 ~ 8742043 (-) True LOC120544569
XM_039777372.1 mRNA downstream 189857 8682663 ~ 8684484 (-) True LOC120543940
XM_039776935.1 mRNA downstream 236254 8622482 ~ 8638087 (-) True LOC120543728
XM_039777235.1 mRNA downstream 482064 8369769 ~ 8392277 (-) True LOC120543874
XM_039777012.1 mRNA upstream 5856 8880476 ~ 8914977 (-) True spint2
XM_039777467.1 mRNA upstream 46816 8921436 ~ 8923366 (-) True LOC120543996
XM_039776768.1 mRNA upstream 256364 9130984 ~ 9158835 (-) True LOC120543625
XM_039788278.1 mRNA upstream 321367 9195987 ~ 9201417 (-) True LOC120551100
XM_039777568.1 mRNA upstream 473589 9348209 ~ 9433655 (-) True eif2a
XR_005638457.1 other downstream 13701 8860361 ~ 8860640 (-) True LOC120554461
XR_005638459.1 other downstream 19749 8854312 ~ 8854592 (-) True LOC120554466
TU21363 other downstream 271451 8602072 ~ 8602890 (-) True G15771
TU21348 other downstream 404581 8468357 ~ 8469760 (-) True G15757
TU20786 other downstream 733566 8137301 ~ 8140775 (-) False LOC120551075
TU21433 other upstream 97294 8971914 ~ 9046433 (-) True G15820
TU21489 other upstream 256919 9131539 ~ 9144120 (-) False LOC120543625
TU21546 other upstream 363347 9237967 ~ 9238784 (-) True G15903
TU21567 other upstream 556241 9430861 ~ 9433602 (-) False eif2a
TU21571 other upstream 638884 9513504 ~ 9517970 (-) False LOC120551129

Expression Profile