Item | Value |
---|---|
RNA id | TCONS_00006761 |
length | 793 |
RNA type | mRNA |
GC content | 0.40 |
exon number | 3 |
gene id | XLOC_003454 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_007122.7 |
NCBI id | CM002895.2 |
chromosome length | 45484837 |
location | 24815667 ~ 24817637 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0006892 | post-Golgi vesicle-mediated transport | biological_process |
GO:0007264 | small GTPase mediated signal transduction | biological_process |
GO:0005829 | cytosol | cellular_component |
GO:0016020 | membrane | cellular_component |
GO:0005085 | guanyl-nucleotide exchange factor activity | molecular_function |
GO:0008270 | zinc ion binding | molecular_function |
id | description |
---|---|
ko04131 | Membrane trafficking |
id | description |
---|---|
ZDB-GENE-040718-216 | Predicted to enable guanyl-nucleotide exchange factor activity and zinc ion binding activity. Predicted to be involved in post-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport and small GTPase mediated signal transduction. Predicted to be active in cytosol and membrane. Orthologous to human RABIF (RAB interacting factor). |
ensembl_id | ENSDART00000146838 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00006744 | lncRNA | upstream | 471623 | 24343328 ~ 24344304 (+) | False | XLOC_003446 |
TCONS_00008611 | lncRNA | upstream | 471911 | 24339396 ~ 24344016 (+) | False | XLOC_003446 |
TCONS_00006743 | lncRNA | upstream | 471911 | 24343010 ~ 24344016 (+) | False | XLOC_003446 |
TCONS_00006741 | lncRNA | upstream | 472734 | 24340031 ~ 24343193 (+) | False | XLOC_003446 |
TCONS_00006737 | lncRNA | upstream | 475005 | 24339393 ~ 24340922 (+) | False | XLOC_003446 |
TCONS_00006773 | lncRNA | downstream | 82958 | 24900479 ~ 24905875 (+) | False | XLOC_003459 |
TCONS_00008401 | lncRNA | downstream | 241941 | 25059462 ~ 25060098 (+) | True | XLOC_003463 |
TCONS_00008612 | lncRNA | downstream | 364336 | 25181857 ~ 25189277 (+) | False | XLOC_003466 |
TCONS_00008613 | lncRNA | downstream | 364571 | 25182092 ~ 25228195 (+) | False | XLOC_003466 |
TCONS_00008614 | lncRNA | downstream | 394135 | 25211656 ~ 25228195 (+) | False | XLOC_003466 |
TCONS_00006759 | mRNA | upstream | 734 | 24804556 ~ 24815193 (+) | False | XLOC_003453 |
TCONS_00006758 | mRNA | upstream | 734 | 24804556 ~ 24815193 (+) | True | XLOC_003453 |
TCONS_00006757 | mRNA | upstream | 1390 | 24800156 ~ 24814537 (+) | False | XLOC_003453 |
TCONS_00006756 | mRNA | upstream | 16252 | 24786378 ~ 24799675 (+) | True | XLOC_003452 |
TCONS_00006755 | mRNA | upstream | 36331 | 24759079 ~ 24779596 (+) | True | XLOC_003451 |
TCONS_00006764 | mRNA | downstream | 1803 | 24819324 ~ 24851464 (+) | False | XLOC_003455 |
TCONS_00006765 | mRNA | downstream | 2103 | 24819624 ~ 24823279 (+) | False | XLOC_003455 |
TCONS_00006766 | mRNA | downstream | 3021 | 24820542 ~ 24851464 (+) | True | XLOC_003455 |
TCONS_00006767 | mRNA | downstream | 34150 | 24851671 ~ 24876621 (+) | True | XLOC_003456 |
TCONS_00006768 | mRNA | downstream | 60299 | 24877820 ~ 24888595 (+) | False | XLOC_003457 |
TCONS_00006746 | other | upstream | 234813 | 24580579 ~ 24581114 (+) | True | XLOC_003447 |
TCONS_00006731 | other | upstream | 470504 | 24339362 ~ 24345423 (+) | False | XLOC_003446 |
TCONS_00006769 | other | downstream | 63788 | 24881309 ~ 24883345 (+) | True | XLOC_003457 |
TCONS_00006774 | other | downstream | 84357 | 24901878 ~ 24903210 (+) | True | XLOC_003459 |
TCONS_00006779 | other | downstream | 163398 | 24980919 ~ 24983498 (+) | True | XLOC_003460 |
TCONS_00006781 | other | downstream | 177212 | 24994733 ~ 25025497 (+) | False | XLOC_003461 |
TCONS_00006782 | other | downstream | 192122 | 25009643 ~ 25025592 (+) | False | XLOC_003461 |