RNA id: XR_005638530.1



Basic Information


Item Value
RNA id XR_005638530.1
length 164
RNA type snRNA
GC content 0.55
exon number 1
gene id LOC120554597
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 12510310 ~ 12510473 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATACTTACCTGGCAGGGGAGATACCATGATCAAGAAGGTGGTTCACCCAGGGCGAGGCTTGGCCATTGCACTCCGGCTGAGCTGACCTCTGCGAATTCCCCAAATGTGGGAATCTCGACTGCATAATTTGTGATAGTGGGGGACTGCGTTCGCGCTCTCCCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU22527 lncRNA downstream 66301 12443629 ~ 12444009 (-) True G16531
TU22524 lncRNA downstream 94397 12413484 ~ 12415913 (-) True G16528
TU22518 lncRNA downstream 115473 12394490 ~ 12394837 (-) True G16525
TU22379 lncRNA downstream 244583 12263662 ~ 12265727 (-) False G16435
TU22402 lncRNA downstream 251686 12257150 ~ 12258624 (-) True G16439
TU22555 lncRNA upstream 65760 12576233 ~ 12576583 (-) True G16554
TU22712 lncRNA upstream 119099 12629572 ~ 12629915 (-) False LOC120544465
TU22720 lncRNA upstream 153726 12664199 ~ 12678548 (-) False slc8a2b
TU22721 lncRNA upstream 311956 12822429 ~ 12822922 (-) True G16676
TU22725 lncRNA upstream 358408 12868881 ~ 12911173 (-) True G16678
XM_039785813.1 mRNA downstream 71771 12419105 ~ 12438539 (-) False rsf1a
XM_039785804.1 mRNA downstream 71771 12419105 ~ 12438539 (-) True rsf1a
XM_039786745.1 mRNA downstream 99038 12395939 ~ 12411272 (-) False clns1a
XM_039786736.1 mRNA downstream 99038 12395939 ~ 12411272 (-) True clns1a
XM_039782923.1 mRNA downstream 137150 12288657 ~ 12373160 (-) True myo7aa
XM_039788555.1 mRNA upstream 36345 12546818 ~ 12567602 (-) True LOC120551266
XM_039790723.1 mRNA upstream 63204 12573677 ~ 12583611 (-) True med17
XM_039790715.1 mRNA upstream 63396 12573869 ~ 12585498 (-) False med17
XM_039790704.1 mRNA upstream 63396 12573869 ~ 12585497 (-) False med17
XM_039790801.1 mRNA upstream 103408 12613881 ~ 12620514 (-) True ech1
XR_005638495.1 other downstream 6950 12503170 ~ 12503360 (-) True LOC120554527
XR_005638506.1 other downstream 10164 12499983 ~ 12500146 (-) True LOC120554552
XR_005638489.1 other downstream 20297 12489850 ~ 12490013 (-) True LOC120554512
XR_005638494.1 other downstream 21247 12488873 ~ 12489063 (-) True LOC120554526
XR_005638366.1 other downstream 23130 12487017 ~ 12487180 (-) True LOC120554324
XR_005638496.1 other upstream 891 12511364 ~ 12511554 (-) True LOC120554530
XR_005638544.1 other upstream 4718 12515191 ~ 12515354 (-) True LOC120554653
XR_005638468.1 other upstream 13295 12523768 ~ 12523939 (-) True LOC120554489
XR_005638498.1 other upstream 14546 12525019 ~ 12525209 (-) True LOC120554533
XR_005638499.1 other upstream 26859 12537332 ~ 12537522 (-) True LOC120554536