RNA id: XR_005641268.1


Basic Information

Item Value
RNA id XR_005641268.1
length 1060
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120571703
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 4630275 ~ 4634119 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tagtgaattattgtattttggaaATTAGTGTTAGAGTTcagtttttaatgtgtgattttgagcatgaaattaactgttttaccAATCGTGTGTTGTAGATGTGTTGGTGCCTTAAGAGTTTagggaaagttgttaaaagtattgaaaaaattgtcatagcgatcgtaaaAAAAGCTGTAATATGGAACTGAGTCACTATGAGCTGGTCCTCCTCCAACAGGAACTAGAGTCCAATCCTAATCAGGACCCTCTACAGTTAGAGGAGGTGGAGACCACTCTCAGCTATCATTTGGTGCCACAGTGGAGAGAACAAACTTCTGACGTCTAAATTCCTGATTCAGATATATTAGTATGCATGAATTTAAGTTACAAAATGTTGAAGGTTTCCCCAGAAtgaagcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacacaacACAACTCTAATGTTTCTGCTCAAAGGTTCAAGGTTcgtctttattgtcattatacaacACAGTTGTCCAATGAAATGTGATCATCATTTACAGCTGCTCTGATCAAGATAAGATACCAGCCGGCTGTTGTAGGTTTCCACAGAATGAAGCCGTAGCTCGACGCTCTTCTCAATCTCCTCTAAAAATCCAGGGAACAGCTCACCTGTGAAAGAGATTTCTCTCCAAGCTGAGAGTGACCCCCTTCTTTATCAACTtttcttcatcaactctttggactgtttgaagaaactgacccatcagagaccagaccctgctgaacctgaacctgaacccagctgtgtgtccatgaagagtaTCTGGTCCATGGAGCCACCACTACTTTAAGAAAAGACCTGTAAGGGAGAGGAGAATAGAAATGGAGGAGAGGCTACGTgaaatggaggagagaggatTGATGGAGAGACTTGAATGGCAGAAGGAGAGAATAACAATGGAAAGGGAAATTGAAATGTTAAGAAGAAGATTGAGGATCCATCAAAGACCAGACTCTGCTGGACCTGAACCCAGC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641280.1 lncRNA downstream 5742 4599848 ~ 4624533 (-) True LOC120571732
TU19630 lncRNA downstream 19288 4602138 ~ 4610987 (-) True G14634
TU19494 lncRNA downstream 55416 4573040 ~ 4574859 (-) False G14552
TU19421 lncRNA downstream 58749 4526074 ~ 4571526 (-) False G14552
XR_005641267.1 lncRNA downstream 61552 4565920 ~ 4568723 (-) True LOC120571696
TU19633 lncRNA upstream 5044 4639163 ~ 4640044 (-) True G14636
TU19634 lncRNA upstream 5526 4639645 ~ 4640044 (-) False G14636
TU19579 lncRNA upstream 48278 4682397 ~ 4775530 (-) True G14588
TU19504 lncRNA upstream 48613 4682732 ~ 4770870 (-) False G14552
TU19425 lncRNA upstream 50591 4684710 ~ 4784281 (-) False G14552
XM_039778784.1 mRNA downstream 491722 4088176 ~ 4138553 (-) True LOC120544909
XM_039778771.1 mRNA downstream 552147 4052192 ~ 4078128 (-) True LOC120544902
XM_039819781.1 mRNA downstream 582486 4033400 ~ 4047789 (-) False LOC120571085
XM_039778759.1 mRNA downstream 614319 3899453 ~ 4015956 (-) True LOC120544895
XM_039819516.1 mRNA upstream 27495 4661614 ~ 5252192 (-) False LOC120570840
XM_039819499.1 mRNA upstream 27495 4661614 ~ 5252186 (-) False LOC120570840
XM_039819491.1 mRNA upstream 27495 4661614 ~ 5252186 (-) False LOC120570840
XM_039819466.1 mRNA upstream 27495 4661614 ~ 5252186 (-) False LOC120570840
XM_039819552.1 mRNA upstream 27495 4661614 ~ 5252186 (-) False LOC120570840
TU19448 other downstream 52390 4526540 ~ 4577885 (-) False G14552
TU19241 other downstream 907643 3704905 ~ 3722632 (-) True G14426
XR_005638367.1 other downstream 1237238 3392932 ~ 3393037 (-) True LOC120554328
unassigned_transcript_82 other downstream 1272078 3358125 ~ 3358197 (-) True trnav-aac
XR_005638528.1 other downstream 1281657 3348428 ~ 3348618 (-) True LOC120554594
TU19430 other upstream 100130 4734249 ~ 4763971 (-) False G14552
TU19434 other upstream 100130 4734249 ~ 4779090 (-) False G14552
TU19455 other upstream 100130 4734249 ~ 4763971 (-) False G14552
TU19476 other upstream 100130 4734249 ~ 4734696 (-) False G14552
TU19480 other upstream 100130 4734249 ~ 4763971 (-) False G14552

Expression Profile