RNA id: XR_005641380.1


Basic Information

Item Value
RNA id XR_005641380.1
length 738
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id LOC120572178
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 6690031 ~ 6690891 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acttctGCATTTTTCCAGCCCGCCCATAGGGGGTGGGACCAATGGGTGGGACCCATAGCCAGTATGGGGACCTCCCTCCCAGATTGTAAACAGTGTCAGCCATCCTGTAGCTAAGCTACCCCGCTCTTGCTCTTGTGGAGAAAGCAGAGTAGTAGATTCACCACGATGGCAGAAGGTAGTTCTGAAGACGATATGGCAGAAGGTGATTTTGAAGATCTGGTGCGCGAATCTGATGCTCGTGGCTACCTGTACGAGCCGAATTACAGCGAGGAACAGTTGCGGATGATAGAGGAACAAGAGGCTGCCGGAGCAGCTGCTGTAGCAGAGGAGCGAGACTTGCCTAGCGGTATTGAGGAAGATCCCGGGCAGACTCGAGCTGGGGCGGATTGGTGGTGTCAGTGTTCTCGCAGAGCGCAAATGGACACAGAGAGTCCTGTTGCTTTCAGGATCCCGAAAGTGAATTGGAAACGCCAACCAAAGCCCGCAGGGAGAAACTGACGCCTGAGTATAAAACAATATCGCCTAACAGCCTACCGTCACTTCGTGGAATGGGTCCTTTGAGATTGGGAAAAGGCTATCGTCTTGTTTTTCCTGCCTGTGTTGTTCAGGACATCAGACGGAGATATCCAGCTCCTGACGGACAATACTGTGGCTATAAAGAAACTATTGAAGCTCTGGATGAGCTATGAGTGTGAAATTGAtcatattatgttttttaattaaaagtttaaaatgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20060 lncRNA upstream 111578 6578222 ~ 6578453 (+) True G14939
TU20051 lncRNA upstream 178145 6511135 ~ 6511886 (+) True G14930
TU20049 lncRNA upstream 180057 6508571 ~ 6509974 (+) True G14928
TU20037 lncRNA upstream 195381 6494388 ~ 6494650 (+) True G14917
TU20028 lncRNA upstream 212885 6476674 ~ 6477146 (+) True G14908
TU20157 lncRNA downstream 253431 6944322 ~ 6991913 (+) True G15012
TU20167 lncRNA downstream 286908 6977799 ~ 6978105 (+) True G15021
TU20179 lncRNA downstream 325904 7016795 ~ 7017311 (+) True G15032
TU20202 lncRNA downstream 361295 7052186 ~ 7053965 (+) True G15050
TU20174 lncRNA downstream 402237 7093128 ~ 7093466 (+) True G15028
XM_039779763.1 mRNA upstream 19969 6665150 ~ 6670062 (+) True LOC120545443
XM_039822975.1 mRNA upstream 51216 6637883 ~ 6638815 (+) True LOC120573309
XM_039818626.1 mRNA upstream 54506 6634599 ~ 6635525 (+) True LOC120570331
XM_039779723.1 mRNA upstream 72308 6616797 ~ 6617723 (+) True LOC120545416
XM_039779709.1 mRNA upstream 76793 6612312 ~ 6613238 (+) True LOC120545410
XM_039779777.1 mRNA downstream 8611 6699502 ~ 6709328 (+) True LOC120545448
XM_039779826.1 mRNA downstream 32903 6723794 ~ 6724723 (+) True LOC120545475
XM_039779839.1 mRNA downstream 38272 6729163 ~ 6734845 (+) True LOC120545480
XM_039779865.1 mRNA downstream 75561 6766452 ~ 6767381 (+) True LOC120545496
XM_039779880.1 mRNA downstream 83125 6774016 ~ 6774945 (+) True LOC120545500
TU19929 other upstream 273961 6414587 ~ 6416070 (+) False spcs2
TU19934 other upstream 274487 6414587 ~ 6415544 (+) False spcs2
TU19935 other upstream 274487 6414587 ~ 6415544 (+) False spcs2
TU19963 other upstream 276656 6408043 ~ 6413375 (+) False spcs2
TU19140 other upstream 1168150 5510757 ~ 5521881 (+) True G14344
TU20165 other downstream 281954 6972845 ~ 6989396 (+) True G15019
TU20402 other downstream 707210 7398101 ~ 7399141 (+) True G15173
unassigned_transcript_83 other downstream 720939 7411830 ~ 7411912 (+) True trnal-cag
TU20486 other downstream 800474 7491365 ~ 7492057 (+) True G15234
TU20573 other downstream 1135719 7826610 ~ 7827290 (+) False LOC120543808

Expression Profile