RNA id: XR_005641502.1


Basic Information

Item Value
RNA id XR_005641502.1
length 1421
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id LOC120572866
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 42838453 ~ 42840995 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cattctatcacccctttaaatcgTTCTGGTGTTGATAAGTTGTTCTTTTATTAGGTTGCGAGCTGTGAACCTATTGGATACAATTCCTGTCGAGTTATTAATGTCTTTGAACTccggttgtttttttgttgagtaCCAGAATTACGGACTACCCGAAGGATGGCGAGCCTTGCCCAGCAGATCTGTGGACGGGGTTGGATGTGGTGTGGCCAGCCATAACGACCTGCCACAGAGGACTTGGATTTGCATATTCACTCACTCTGATACAGATAAGATACACACTAACCTACCCGGGTAGAAGCATTAGAGTTGATATTGAACACACATACATCCGGATATTTCCCCCTAAGACTGAACTTTCTTTCTCTGAGGCAGAAAGTCTCGTCCTCAATACAGAGGAGCCATAGGGTTGGACCAACCAACTAAAAAAAGACCTACttcttttgtttattattttcattaagaGCTCTATTTTATTTTGGTATATACATCGTATGGTCTGTAAACTCTGTAAATGTTGTTGATTCATGGTGACAGGCAATAAAGCTGTCAACTGTTAACCCAACACGCACTCCCTTTGTGAGTTATCTAATTCAAGTGTATACTCCCATCGGACCTAGAGTGATGTGTCTCATCTGCCAATCAGGTTAGGACCAGAGGTGCTACACTAACGCTAACTATTTGGTAGCTGCCATGCTACAATAGAGAACCTATTACAATCAGATTTTAAGACAGCTCCTAGCTAAACCTAACTAGACTACTAGAGTTGAGCCGGATACTCGGCTGAAACAAGTATCCGGTACGGATAAAGCACTTTTGCCGAGTACGAGTATTATACGAGTAATACGAGTCAATATCTGTGCTCGGATTGAATAAAAATCCTCATTGGGTAGCTGACTGTGTCTGCGTTCTGTGATAGGCTAGTCACACAGCGCCCCTcccctacacacatacagatttattgtgttgctgtgtcccactctgctcactcacacacagaacactgagaagagaacagctctctctctctctctgtctctccctcagtCACTCAAGTTCGCGGGTCTTTTCCGTTAACGTTTAGGGTTTCTTCAgcttcagATGCTGTAAATGTGTACACCAAAGTCTGAAGACAATGttctgatttattttccaaaGGTATGTGGCTCCATAATGTAATTAGGTTTTAATGAAGTGCTACAACTTTATGCATTTAGGCTGCAGTTATGCCATTCTATATGGGAAGTTTAAAAGTTATGATTGAGATGATGGTTTTGTATGCATTTTCTATTACTGAAAGAGTGATTggcagagaagctgtatacttTTGATCGGATGCTGTAAATGTGTACACCAAAGTCTGAAGACAATGttctgatttattttccaaaggaaaaataaagaagaagGGTTCAACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641075.1 lncRNA downstream 5782 42821613 ~ 42832671 (-) True LOC120570523
XR_005638096.1 lncRNA downstream 106070 42731419 ~ 42732383 (-) True LOC120553091
TU31686 lncRNA downstream 123307 42714932 ~ 42715146 (-) True G23416
TU31662 lncRNA downstream 164859 42673188 ~ 42673594 (-) True G23396
TU31661 lncRNA downstream 195173 42643070 ~ 42643280 (-) True G23395
TU31746 lncRNA upstream 86157 42927152 ~ 42927449 (-) True G23470
TU31749 lncRNA upstream 93338 42934333 ~ 42934806 (-) True G23473
TU31762 lncRNA upstream 138667 42979662 ~ 42979887 (-) True G23486
TU31766 lncRNA upstream 140860 42981855 ~ 42982140 (-) True G23490
TU31773 lncRNA upstream 148479 42989474 ~ 42989764 (-) True G23497
XM_039791142.1 mRNA downstream 69887 42739636 ~ 42768566 (-) True gal3st2
XM_039791086.1 mRNA downstream 216493 42393288 ~ 42621960 (-) False fat3a
XM_039786068.1 mRNA upstream 63818 42904813 ~ 42910737 (-) True LOC120549271
XM_039826347.1 mRNA upstream 151796 42992791 ~ 43063245 (-) True efhd1
XM_039824045.1 mRNA upstream 401559 43242554 ~ 43346673 (-) False LOC120574039
XM_039792056.1 mRNA upstream 540131 43381126 ~ 43383213 (-) True LOC120553532
XM_039819073.1 mRNA upstream 725585 43566580 ~ 43578411 (-) True LOC120570616
unassigned_transcript_105 other downstream 1806575 41031806 ~ 41031878 (-) True trnak-uuu_7
TU31014 other downstream 2805297 40025882 ~ 40033156 (-) False LOC120546248
XR_005641089.1 other downstream 4102630 38728941 ~ 38735823 (-) False LOC120570635
TU30601 other downstream 4474765 38353060 ~ 38363688 (-) False robo2
XR_005637810.1 other downstream 5092183 37734865 ~ 37746270 (-) False p4ha3
XR_005641814.1 other upstream 395687 43236682 ~ 43346673 (-) True LOC120574039
XR_005641815.1 other upstream 395687 43236682 ~ 43346664 (-) False LOC120574039
unassigned_transcript_106 other upstream 686859 43527854 ~ 43527925 (-) True trnaa-ugc
unassigned_transcript_107 other upstream 687194 43528189 ~ 43528260 (-) True trnag-ucc_1
unassigned_transcript_108 other upstream 687441 43528436 ~ 43528517 (-) True trnas-aga_1

Expression Profile