RNA id: XR_005641651.1


Basic Information

Item Value
RNA id XR_005641651.1
length 366
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id LOC120573156
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 46839960 ~ 46840802 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAAGGACCGTTCCAATGTCGAGGATCCTCCGAATCCCACCAAGGACTGAGTCCTTCGTTCGGAGAAATCCCCATAGACGGCAAAGGATGCATATGTGTATCCTTCGCGCTCCCATATCACCCACAATCCCTTGCGCGCGGCTTTGCcggcttgtttaaaaaaattaaatggcgGACCTAAGCGGGAGTTGGAGCGGTATCGCTGACGGcgaaataatcatttaaatggacAAACTGAGGCTGTCATTAAGGATgggaaagcaaaagacaagCAGGGAGACAAGAGGCCAAAGAGAGATGAATAGCTAGATTATTTGCTAAAGCCTTTTAGAGATTGGCattctgaaaataaatgcattaaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32782 lncRNA downstream 1096 46837651 ~ 46838864 (-) True G24341
TU32777 lncRNA downstream 24677 46814773 ~ 46815283 (-) True G24336
TU32768 lncRNA downstream 97561 46742120 ~ 46742399 (-) True G24327
TU32767 lncRNA downstream 104568 46733849 ~ 46735392 (-) True G24326
TU32758 lncRNA downstream 114947 46724666 ~ 46725013 (-) True G24317
TU32789 lncRNA upstream 14995 46855797 ~ 46855999 (-) True G24344
XR_005638179.1 lncRNA upstream 50928 46891730 ~ 46892354 (-) True LOC120553520
TU32792 lncRNA upstream 80047 46920849 ~ 46921074 (-) True G24347
TU32802 lncRNA upstream 119308 46960110 ~ 46960321 (-) True G24357
TU32806 lncRNA upstream 122116 46962918 ~ 47007827 (-) True G24361
XM_039780274.1 mRNA downstream 934953 45872223 ~ 45905007 (-) True akap1b
XM_039785509.1 mRNA downstream 978868 45815082 ~ 45861092 (-) True cuedc1b
XM_039785495.1 mRNA downstream 978868 45821487 ~ 45861092 (-) False cuedc1b
XM_039785500.1 mRNA downstream 978868 45821489 ~ 45861092 (-) False cuedc1b
XM_039823176.1 mRNA downstream 1031538 45784600 ~ 45808422 (-) True wsb1
XM_039824258.1 mRNA upstream 277595 47118397 ~ 47134701 (-) True exosc5
XM_039824274.1 mRNA upstream 294052 47134854 ~ 47142596 (-) True bet1l
XM_039781949.1 mRNA upstream 302939 47143741 ~ 47150610 (-) True psmd8
XM_039785285.1 mRNA upstream 317243 47158045 ~ 47170349 (-) True ehd2b
XM_039785292.1 mRNA upstream 317243 47158045 ~ 47170348 (-) False ehd2b
unassigned_transcript_136 other downstream 1913504 44926385 ~ 44926456 (-) True trnah-gug_5
unassigned_transcript_135 other downstream 1913801 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_134 other downstream 1914402 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_133 other downstream 1914700 44925188 ~ 44925260 (-) True trnar-acg_8
unassigned_transcript_132 other downstream 1917347 44922541 ~ 44922613 (-) True trnar-acg_7
TU32961 other upstream 294055 47134857 ~ 47142549 (-) False bet1l

Expression Profile