RNA id: TCONS_00006762


Basic Information

Item Value
RNA id TCONS_00006762
length 1062
RNA type mRNA
GC content 0.38
exon number 3
gene id XLOC_003454
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24815667 ~ 24817637 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATGGAGTCTTGTGTTATTCTGAGCGGAACGTAAAGTCCGTATCTTGCGTTGATCCGGTCTGCTTTAGCAGTTGCGCCAATATTAGCAGTAGCAAACACTTGTCCGCTAGTTTTTCCAACTTATGTTTATAATTGTGTATGAACACAAATTACCAAATTAGTACTTAACGTTTTGTAGACTTTATTTGGGTAATACGTCTGTATTAAGGATCAGTTTACTTCATGGTCTGACCCAGAGTGTCTTACTAACATGGATGACAGTAAACCGACCTCCTCTCCCGAGGGACCCGTAGACCCCTCTCTCGTGTCAGAAGATGGCAAAAATGTCAAAGCTGTTTTGTGCCAGAGATGTGGATCCAAAGTGCTCTGTCCAGGCATGGCAGTCTTTGCAGAAAAAGAGCTGTTTCTTCCTTCGATGAGAAAGAAAACTTCCATTGGTCAGTCAGACGGGACGTTGGATGGGGACACCTTAATGGCTCACTGGCTGGTTGATGACATGTACACATTTGAGAATGTGGGCTTCACAAAAGATGTAGGCAAAGTCAAGTATCTTATTTGTGCAGATTGCGAGATCGGACCTATCGGTTGGCATTGCTTAGATGATAAGAAGAGTTTCTATGTGGCATTGGACAGGGTGAACCATGAATAGAGCACTCACTGAAGGCACTGTACGGAAAATTGTATGCTATTTGATTATATAActtaaatgtcttttttaatgCAAGTCCTGATTTAGTTCTTTTTGGTGAGTTCAGATACATGTGATGTTTTTAGGGTTTTTTGTTCTCACCAAACTATGTTAACATGTTCAACTGTACTTGTCTTTCATAAAGGTCTGCCATAGATAAATGGAGACATTTCTTATAAACATTCCTAATCACAAGGTCTTTTCCATACCTCTTATCTCTCTATTACTTTTCATACTTCTTCAgccatgttttgtttgtttgtttgaaaaggAAACGTCAATGTTAGTTAAAATGTATTcttgaacattattgagttttgtaaaataaaagactgaaaaatgaataaaatataactcTTAGCTGTTCTCAAAA

Function

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040718-216 Predicted to enable guanyl-nucleotide exchange factor activity and zinc ion binding activity. Predicted to be involved in post-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport and small GTPase mediated signal transduction. Predicted to be active in cytosol and membrane. Orthologous to human RABIF (RAB interacting factor).

Ensembl:

ensembl_id ENSDART00000115356

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006744 lncRNA upstream 471934 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00008611 lncRNA upstream 472222 24339396 ~ 24344016 (+) False XLOC_003446
TCONS_00006743 lncRNA upstream 472222 24343010 ~ 24344016 (+) False XLOC_003446
TCONS_00006741 lncRNA upstream 473045 24340031 ~ 24343193 (+) False XLOC_003446
TCONS_00006737 lncRNA upstream 475316 24339393 ~ 24340922 (+) False XLOC_003446
TCONS_00006773 lncRNA downstream 82842 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00008401 lncRNA downstream 241825 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00008612 lncRNA downstream 364220 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008613 lncRNA downstream 364455 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA downstream 394019 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006759 mRNA upstream 1045 24804556 ~ 24815193 (+) False XLOC_003453
TCONS_00006758 mRNA upstream 1045 24804556 ~ 24815193 (+) True XLOC_003453
TCONS_00006757 mRNA upstream 1701 24800156 ~ 24814537 (+) False XLOC_003453
TCONS_00006756 mRNA upstream 16563 24786378 ~ 24799675 (+) True XLOC_003452
TCONS_00006755 mRNA upstream 36642 24759079 ~ 24779596 (+) True XLOC_003451
TCONS_00006764 mRNA downstream 1687 24819324 ~ 24851464 (+) False XLOC_003455
TCONS_00006765 mRNA downstream 1987 24819624 ~ 24823279 (+) False XLOC_003455
TCONS_00006766 mRNA downstream 2905 24820542 ~ 24851464 (+) True XLOC_003455
TCONS_00006767 mRNA downstream 34034 24851671 ~ 24876621 (+) True XLOC_003456
TCONS_00006768 mRNA downstream 60183 24877820 ~ 24888595 (+) False XLOC_003457
TCONS_00006746 other upstream 235124 24580579 ~ 24581114 (+) True XLOC_003447
TCONS_00006731 other upstream 470815 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006769 other downstream 63672 24881309 ~ 24883345 (+) True XLOC_003457
TCONS_00006774 other downstream 84241 24901878 ~ 24903210 (+) True XLOC_003459
TCONS_00006779 other downstream 163282 24980919 ~ 24983498 (+) True XLOC_003460
TCONS_00006781 other downstream 177096 24994733 ~ 25025497 (+) False XLOC_003461
TCONS_00006782 other downstream 192006 25009643 ~ 25025592 (+) False XLOC_003461

Expression Profile

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