RNA id: unassigned_transcript_132



Basic Information


Item Value
RNA id unassigned_transcript_132
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnar-acg_7
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 44922541 ~ 44922613 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGGCTAGTGGCGCAATGGATAACGCGTCTGACTACGAATCAGAAGATTCTAGGTTCGACTCCTGGCTAGCTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005637324.1 lncRNA downstream 38203 44880670 ~ 44884338 (-) True LOC120549064
XR_005637325.1 lncRNA downstream 42032 44866130 ~ 44880509 (-) True LOC120549067
TU32274 lncRNA downstream 106165 44812153 ~ 44816376 (-) True G23911
TU32275 lncRNA downstream 116502 44805798 ~ 44806039 (-) True G23912
TU32268 lncRNA downstream 148102 44774205 ~ 44774439 (-) True G23906
TU32317 lncRNA upstream 43126 44965739 ~ 44965970 (-) True G23949
TU32333 lncRNA upstream 76364 44998977 ~ 44999217 (-) True G23964
TU32347 lncRNA upstream 80821 45003434 ~ 45005501 (-) True G23977
TU32357 lncRNA upstream 395994 45318607 ~ 45318882 (-) True G23986
TU32361 lncRNA upstream 408119 45330732 ~ 45330998 (-) True G23990
XM_039788116.1 mRNA downstream 97554 44816628 ~ 44824987 (-) True mrps23
XM_039789460.1 mRNA downstream 183108 44737861 ~ 44739433 (-) True LOC120551889
XM_039824994.1 mRNA downstream 808470 44098963 ~ 44114071 (-) False LOC120574575
XM_039825002.1 mRNA downstream 808470 44098963 ~ 44114071 (-) True LOC120574575
XM_039824969.1 mRNA downstream 824068 44094848 ~ 44098473 (-) True LOC120574562
XM_039777980.1 mRNA upstream 45585 44968198 ~ 44986626 (-) True phf12b
XM_039778005.1 mRNA upstream 65350 44987963 ~ 45315867 (-) False sez6b
XM_039777999.1 mRNA upstream 84540 45007153 ~ 45315867 (-) False sez6b
XM_039777990.1 mRNA upstream 84540 45007153 ~ 45315867 (-) True sez6b
XM_039791360.1 mRNA upstream 572924 45495537 ~ 45628896 (-) False myo18ab
unassigned_transcript_131 other downstream 955 44921515 ~ 44921586 (-) True trnah-gug_3
unassigned_transcript_130 other downstream 2596 44919873 ~ 44919945 (-) True trnar-acg_6
unassigned_transcript_129 other downstream 3934 44918535 ~ 44918607 (-) True trnar-acg_5
unassigned_transcript_128 other downstream 6320 44916150 ~ 44916221 (-) True trnah-gug_2
unassigned_transcript_127 other downstream 6618 44915851 ~ 44915923 (-) True trnar-acg_4
unassigned_transcript_133 other upstream 2575 44925188 ~ 44925260 (-) True trnar-acg_8
unassigned_transcript_134 other upstream 2874 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_135 other upstream 3474 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_136 other upstream 3772 44926385 ~ 44926456 (-) True trnah-gug_5
TU32961 other upstream 2212244 47134857 ~ 47142549 (-) False bet1l