RNA id: unassigned_transcript_133



Basic Information


Item Value
RNA id unassigned_transcript_133
length 73
RNA type tRNA
GC content 0.53
exon number 1
gene id trnar-acg_8
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 44925188 ~ 44925260 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGGCTAGTGGCGCAATGGATAACGCGTCTGACTACGGATCAGAAGATTCTAGGTTCGACTCCTGGCTAGCTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005637324.1 lncRNA downstream 40850 44880670 ~ 44884338 (-) True LOC120549064
XR_005637325.1 lncRNA downstream 44679 44866130 ~ 44880509 (-) True LOC120549067
TU32274 lncRNA downstream 108812 44812153 ~ 44816376 (-) True G23911
TU32275 lncRNA downstream 119149 44805798 ~ 44806039 (-) True G23912
TU32268 lncRNA downstream 150749 44774205 ~ 44774439 (-) True G23906
TU32317 lncRNA upstream 40479 44965739 ~ 44965970 (-) True G23949
TU32333 lncRNA upstream 73717 44998977 ~ 44999217 (-) True G23964
TU32347 lncRNA upstream 78174 45003434 ~ 45005501 (-) True G23977
TU32357 lncRNA upstream 393347 45318607 ~ 45318882 (-) True G23986
TU32361 lncRNA upstream 405472 45330732 ~ 45330998 (-) True G23990
XM_039788116.1 mRNA downstream 100201 44816628 ~ 44824987 (-) True mrps23
XM_039789460.1 mRNA downstream 185755 44737861 ~ 44739433 (-) True LOC120551889
XM_039824994.1 mRNA downstream 811117 44098963 ~ 44114071 (-) False LOC120574575
XM_039825002.1 mRNA downstream 811117 44098963 ~ 44114071 (-) True LOC120574575
XM_039824969.1 mRNA downstream 826715 44094848 ~ 44098473 (-) True LOC120574562
XM_039777980.1 mRNA upstream 42938 44968198 ~ 44986626 (-) True phf12b
XM_039778005.1 mRNA upstream 62703 44987963 ~ 45315867 (-) False sez6b
XM_039777999.1 mRNA upstream 81893 45007153 ~ 45315867 (-) False sez6b
XM_039777990.1 mRNA upstream 81893 45007153 ~ 45315867 (-) True sez6b
XM_039791360.1 mRNA upstream 570277 45495537 ~ 45628896 (-) False myo18ab
unassigned_transcript_132 other downstream 2575 44922541 ~ 44922613 (-) True trnar-acg_7
unassigned_transcript_131 other downstream 3602 44921515 ~ 44921586 (-) True trnah-gug_3
unassigned_transcript_130 other downstream 5243 44919873 ~ 44919945 (-) True trnar-acg_6
unassigned_transcript_129 other downstream 6581 44918535 ~ 44918607 (-) True trnar-acg_5
unassigned_transcript_128 other downstream 8967 44916150 ~ 44916221 (-) True trnah-gug_2
unassigned_transcript_134 other upstream 227 44925487 ~ 44925558 (-) True trnah-gug_4
unassigned_transcript_135 other upstream 827 44926087 ~ 44926159 (-) True trnah-aug
unassigned_transcript_136 other upstream 1125 44926385 ~ 44926456 (-) True trnah-gug_5
TU32961 other upstream 2209597 47134857 ~ 47142549 (-) False bet1l