RNA id: unassigned_transcript_75


Basic Information

Item Value
RNA id unassigned_transcript_75
length 73
RNA type tRNA
GC content 0.48
exon number 2
gene id trnar-ucu_3
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 644048 ~ 644139 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTCTGTGGCGCAATGGATAGCGCATTGGACTTCTAAttcaaaggttgtgggttcgagtcCCACCAGAGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17532 lncRNA upstream 80379 563345 ~ 563669 (+) True G13178
TU17510 lncRNA upstream 106818 477266 ~ 537230 (+) True G13158
TU17527 lncRNA upstream 112945 530110 ~ 531103 (+) True G13174
TU17524 lncRNA upstream 116961 526615 ~ 527087 (+) True G13172
TU17497 lncRNA upstream 227478 416302 ~ 416570 (+) True G13145
TU17542 lncRNA downstream 10021 654160 ~ 755921 (+) True G13186
TU17546 lncRNA downstream 10021 654160 ~ 665972 (+) False G13186
TU17543 lncRNA downstream 10227 654366 ~ 755921 (+) False G13186
TU17551 lncRNA downstream 61359 705498 ~ 713506 (+) True G13191
TU17554 lncRNA downstream 75227 719366 ~ 719714 (+) True G13193
XM_039822841.1 mRNA upstream 73552 553166 ~ 570496 (+) True gpr171
XM_039822831.1 mRNA upstream 73552 553167 ~ 570496 (+) False gpr171
XM_039780996.1 mRNA upstream 256662 386373 ~ 387386 (+) True triap1
XM_039791684.1 mRNA upstream 468899 158592 ~ 175149 (+) True LOC120553352
XM_039787484.1 mRNA downstream 173986 818125 ~ 842046 (+) True shkbp1
XM_039819667.1 mRNA downstream 341469 985608 ~ 989953 (+) False LOC120570981
XM_039819681.1 mRNA downstream 341990 986129 ~ 990071 (+) False LOC120570981
XM_039819673.1 mRNA downstream 341990 986129 ~ 989953 (+) True LOC120570981
XM_039819687.1 mRNA downstream 341991 986130 ~ 989709 (+) False LOC120570981
unassigned_transcript_74 other upstream 1455 642502 ~ 642593 (+) True trnar-ucu_2
unassigned_transcript_73 other upstream 2285 641672 ~ 641763 (+) True trnar-ucu_1
TU17494 other upstream 197495 386401 ~ 446553 (+) False triap1
TU17495 other upstream 251001 386401 ~ 393047 (+) False triap1
TU17440 other upstream 280098 309204 ~ 363950 (+) False G13106
unassigned_transcript_76 other downstream 2917 647056 ~ 647147 (+) True trnar-ucu_4
unassigned_transcript_77 other downstream 4341 648480 ~ 648571 (+) True trnar-ucu_5
unassigned_transcript_78 other downstream 5501 649640 ~ 649731 (+) True trnar-ucu_6
unassigned_transcript_81 other downstream 30143 674282 ~ 674373 (+) True trnar-ucu_9
TU17630 other downstream 121400 765539 ~ 765977 (+) True G13234