RNA id: unassigned_transcript_87


Basic Information

Item Value
RNA id unassigned_transcript_87
length 73
RNA type tRNA
GC content 0.61
exon number 2
gene id trnar-ucu_11
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9884513 ~ 9884604 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAAttcaaaggttgtgggttcgagtcCCACCAGAGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21268 lncRNA upstream 17162 9866843 ~ 9867351 (+) True G15710
TU21271 lncRNA upstream 18620 9858460 ~ 9865893 (+) True G15713
TU21234 lncRNA upstream 72381 9811846 ~ 9812132 (+) True G15684
TU21216 lncRNA upstream 191035 9692403 ~ 9693478 (+) True G15668
TU21212 lncRNA upstream 199152 9685016 ~ 9685361 (+) True G15666
TU21261 lncRNA downstream 850 9885454 ~ 9944445 (+) False LOC120551195
TU21291 lncRNA downstream 34979 9919583 ~ 9919919 (+) True G15718
TU21274 lncRNA downstream 49301 9933905 ~ 9935771 (+) False G15714
TU21276 lncRNA downstream 49301 9933905 ~ 9935771 (+) False G15714
TU21278 lncRNA downstream 49301 9933905 ~ 9935771 (+) False G15714
XM_039780891.1 mRNA upstream 86787 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA upstream 86787 9750631 ~ 9797726 (+) False clip3
XM_039788367.1 mRNA upstream 231682 9634274 ~ 9652831 (+) True LOC120551159
XM_039783389.1 mRNA upstream 258732 9603260 ~ 9625781 (+) True LOC120547748
XM_039788344.1 mRNA upstream 329897 9544019 ~ 9554616 (+) True LOC120551143
XM_039788424.1 mRNA downstream 68948 9953552 ~ 9976502 (+) True LOC120551195
XM_039779289.1 mRNA downstream 171390 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA downstream 172265 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039787317.1 mRNA downstream 474785 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA downstream 474827 10359431 ~ 10376811 (+) False LOC120550666
unassigned_transcript_86 other upstream 14589 9869833 ~ 9869924 (+) True trnar-ucu_10
TU21177 other upstream 214984 9598960 ~ 9669529 (+) True G15640
TU21180 other upstream 216034 9645137 ~ 9668479 (+) True G15642
TU21174 other upstream 248034 9631391 ~ 9636479 (+) False LOC120551159
TU21176 other upstream 248034 9634304 ~ 9636479 (+) False LOC120551159
TU21262 other downstream 1009 9885613 ~ 9944445 (+) False LOC120551195
TU21264 other downstream 75462 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other downstream 75462 9960066 ~ 9965774 (+) False LOC120551195
TU21270 other downstream 117646 10002250 ~ 10003595 (+) True G15712
XR_005638446.1 other downstream 1671703 11556307 ~ 11556455 (+) True LOC120554434