Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006776 |
| length | 774 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 4 |
| gene id | XLOC_003460 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 24907469 ~ 24993225 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0032836 | glomerular basement membrane development | biological_process |
| GO:0060348 | bone development | biological_process |
| GO:0014846 | esophagus smooth muscle contraction | biological_process |
| GO:0060384 | innervation | biological_process |
| GO:0010669 | epithelial structure maintenance | biological_process |
| GO:0030177 | positive regulation of Wnt signaling pathway | biological_process |
| GO:0002063 | chondrocyte development | biological_process |
| GO:0030201 | heparan sulfate proteoglycan metabolic process | biological_process |
| GO:0035860 | glial cell-derived neurotrophic factor receptor signaling pathway | biological_process |
| GO:0040037 | negative regulation of fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0010575 | positive regulation of vascular endothelial growth factor production | biological_process |
| GO:0048706 | embryonic skeletal system development | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0005795 | Golgi stack | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0009986 | cell surface | cellular_component |
| GO:0008449 | N-acetylglucosamine-6-sulfatase activity | molecular_function |
| GO:0005509 | calcium ion binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0005539 | glycosaminoglycan binding | molecular_function |
| GO:0008484 | sulfuric ester hydrolase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0004065 | arylsulfatase activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-759 | Predicted to enable N-acetylglucosamine-6-sulfatase activity and glycosaminoglycan binding activity. Acts upstream of or within with a positive effect on epithelial structure maintenance. Predicted to be located in Golgi stack and extracellular space. Predicted to be active in cell surface; endoplasmic reticulum; and plasma membrane. Is expressed in several structures, including central nervous system; head; hypochord; neural plate; and neural tube. Orthologous to human SULF2 (sulfatase 2). |
| ensembl_id | ENSDART00000131431 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006773 | lncRNA | upstream | 19559 | 24900479 ~ 24905875 (+) | False | XLOC_003459 |
| TCONS_00006744 | lncRNA | upstream | 581130 | 24343328 ~ 24344304 (+) | False | XLOC_003446 |
| TCONS_00008611 | lncRNA | upstream | 581418 | 24339396 ~ 24344016 (+) | False | XLOC_003446 |
| TCONS_00008401 | lncRNA | downstream | 89805 | 25059462 ~ 25060098 (+) | True | XLOC_003463 |
| TCONS_00008612 | lncRNA | downstream | 212200 | 25181857 ~ 25189277 (+) | False | XLOC_003466 |
| TCONS_00008613 | lncRNA | downstream | 212435 | 25182092 ~ 25228195 (+) | False | XLOC_003466 |
| TCONS_00008614 | lncRNA | downstream | 241999 | 25211656 ~ 25228195 (+) | False | XLOC_003466 |
| TCONS_00006796 | lncRNA | downstream | 242883 | 25212540 ~ 25226926 (+) | True | XLOC_003466 |
| TCONS_00006771 | mRNA | upstream | 19170 | 24900123 ~ 24906264 (+) | False | XLOC_003459 |
| TCONS_00006772 | mRNA | upstream | 19559 | 24900254 ~ 24905875 (+) | False | XLOC_003459 |
| TCONS_00006770 | mRNA | upstream | 30527 | 24889170 ~ 24894907 (+) | True | XLOC_003458 |
| TCONS_00006768 | mRNA | upstream | 36839 | 24877820 ~ 24888595 (+) | False | XLOC_003457 |
| TCONS_00006767 | mRNA | upstream | 48813 | 24851671 ~ 24876621 (+) | True | XLOC_003456 |
| TCONS_00006780 | mRNA | downstream | 25048 | 24994705 ~ 25041804 (+) | False | XLOC_003461 |
| TCONS_00006783 | mRNA | downstream | 40834 | 25010491 ~ 25043214 (+) | False | XLOC_003461 |
| TCONS_00006786 | mRNA | downstream | 74425 | 25044082 ~ 25063586 (+) | True | XLOC_003462 |
| TCONS_00006787 | mRNA | downstream | 94862 | 25064519 ~ 25139061 (+) | False | XLOC_003464 |
| TCONS_00006789 | mRNA | downstream | 131563 | 25101220 ~ 25140425 (+) | False | XLOC_003464 |
| TCONS_00006774 | other | upstream | 22224 | 24901878 ~ 24903210 (+) | True | XLOC_003459 |
| TCONS_00006769 | other | upstream | 42089 | 24881309 ~ 24883345 (+) | True | XLOC_003457 |
| TCONS_00006746 | other | upstream | 344320 | 24580579 ~ 24581114 (+) | True | XLOC_003447 |
| TCONS_00006735 | other | upstream | 583371 | 24339385 ~ 24342063 (+) | False | XLOC_003446 |
| TCONS_00006779 | other | downstream | 11262 | 24980919 ~ 24983498 (+) | True | XLOC_003460 |
| TCONS_00006781 | other | downstream | 25076 | 24994733 ~ 25025497 (+) | False | XLOC_003461 |
| TCONS_00006782 | other | downstream | 39986 | 25009643 ~ 25025592 (+) | False | XLOC_003461 |
| TCONS_00006784 | other | downstream | 40881 | 25010538 ~ 25031246 (+) | False | XLOC_003461 |
| TCONS_00006785 | other | downstream | 68616 | 25038273 ~ 25040637 (+) | True | XLOC_003461 |
