RNA id: TCONS_00006777


Basic Information

Item Value
RNA id TCONS_00006777
length 405
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_003460
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24907469 ~ 24993225 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGGATTTGTTTGGATGGGAATGTCCAGGGATGAGCAGTGCATGGTGTTTGTTGATGAaggtttttgctgtttgtttggaTGGGTGAAGTTTGTTTGGTCACCTTTAACCTGAGAACCGCAGGGTGTCTGGATCTACAGTGCAACAGGATTCCACTTTTCTGAGGTTGACAAAAAACTGCGACCTTACTAGTAAGTGTGGGAGGTGGAGCACTGGTTAAGGTCATGGCAGTAGGGTGGAGACCGGCCACCCTTCTCCTAGTCTTCATCCTGACGTTCATCTGTCTTTCGGATGGATCCACGTACCTCTCTGGCCAAAGACAGAGGTCTCGTCTTCAGAGAGATCGGCGAAACGTTCGACCAAACATGATTCTCATTCTTACTGATGACCAGGACATTGAACTTG

Function

GO:

id name namespace
GO:0032836 glomerular basement membrane development biological_process
GO:0060348 bone development biological_process
GO:0014846 esophagus smooth muscle contraction biological_process
GO:0060384 innervation biological_process
GO:0010669 epithelial structure maintenance biological_process
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0002063 chondrocyte development biological_process
GO:0030201 heparan sulfate proteoglycan metabolic process biological_process
GO:0035860 glial cell-derived neurotrophic factor receptor signaling pathway biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0010575 positive regulation of vascular endothelial growth factor production biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005795 Golgi stack cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0008449 N-acetylglucosamine-6-sulfatase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005539 glycosaminoglycan binding molecular_function
GO:0008484 sulfuric ester hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004065 arylsulfatase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-759 Predicted to enable N-acetylglucosamine-6-sulfatase activity and glycosaminoglycan binding activity. Acts upstream of or within with a positive effect on epithelial structure maintenance. Predicted to be located in Golgi stack and extracellular space. Predicted to be active in cell surface; endoplasmic reticulum; and plasma membrane. Is expressed in several structures, including central nervous system; head; hypochord; neural plate; and neural tube. Orthologous to human SULF2 (sulfatase 2).

Ensembl:

ensembl_id ENSDART00000145647

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006773 lncRNA upstream 51983 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00006744 lncRNA upstream 613554 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00008611 lncRNA upstream 613842 24339396 ~ 24344016 (+) False XLOC_003446
TCONS_00008401 lncRNA downstream 93099 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00008612 lncRNA downstream 215494 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008613 lncRNA downstream 215729 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA downstream 245293 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006796 lncRNA downstream 246177 25212540 ~ 25226926 (+) True XLOC_003466
TCONS_00006771 mRNA upstream 51594 24900123 ~ 24906264 (+) False XLOC_003459
TCONS_00006772 mRNA upstream 51983 24900254 ~ 24905875 (+) False XLOC_003459
TCONS_00006770 mRNA upstream 62951 24889170 ~ 24894907 (+) True XLOC_003458
TCONS_00006768 mRNA upstream 69263 24877820 ~ 24888595 (+) False XLOC_003457
TCONS_00006767 mRNA upstream 81237 24851671 ~ 24876621 (+) True XLOC_003456
TCONS_00006780 mRNA downstream 28342 24994705 ~ 25041804 (+) False XLOC_003461
TCONS_00006783 mRNA downstream 44128 25010491 ~ 25043214 (+) False XLOC_003461
TCONS_00006786 mRNA downstream 77719 25044082 ~ 25063586 (+) True XLOC_003462
TCONS_00006787 mRNA downstream 98156 25064519 ~ 25139061 (+) False XLOC_003464
TCONS_00006789 mRNA downstream 134857 25101220 ~ 25140425 (+) False XLOC_003464
TCONS_00006774 other upstream 54648 24901878 ~ 24903210 (+) True XLOC_003459
TCONS_00006769 other upstream 74513 24881309 ~ 24883345 (+) True XLOC_003457
TCONS_00006746 other upstream 376744 24580579 ~ 24581114 (+) True XLOC_003447
TCONS_00006735 other upstream 615795 24339385 ~ 24342063 (+) False XLOC_003446
TCONS_00006779 other downstream 14556 24980919 ~ 24983498 (+) True XLOC_003460
TCONS_00006781 other downstream 28370 24994733 ~ 25025497 (+) False XLOC_003461
TCONS_00006782 other downstream 43280 25009643 ~ 25025592 (+) False XLOC_003461
TCONS_00006784 other downstream 44175 25010538 ~ 25031246 (+) False XLOC_003461
TCONS_00006785 other downstream 71910 25038273 ~ 25040637 (+) True XLOC_003461

Expression Profile

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