RNA id: TU186577


Basic Information

Item Value
RNA id TU186577
length 312
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G138456
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 34206319 ~ 34206732 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgtgtgtatgtgtatgtgtgtgtgggtgtgtgtgtgcgtctgtgtgtgtgtgtgtgtatgaatgtgtgtgggtgtgtgtttatgtgtgtgcgtctgtgtgtgtctctatgtgtgtatgaatgtgtgtgtgtgtgtgtctgtgtctatgtgtgtatgaatgtgtgtgggtgtgtgtgtgtgtgtctgtgtctatgtgtgtgtgtatgaatgtgtgtgtgtatgaatgtgtgtctgtatgtgtgtgcgtctgtgtgtgtctatgtgtgtgtgtgtatgaatgcgTGTGTTTTTTAGTCACTTTTGCCGTTTGTT

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186575 lncRNA upstream 2584 34202931 ~ 34203735 (+) True G138454
TU186571 lncRNA upstream 26311 34179278 ~ 34180008 (+) True G138451
TU186568 lncRNA upstream 27773 34177329 ~ 34178546 (+) False LOC120571618
TU186570 lncRNA upstream 40776 34164383 ~ 34165543 (+) True G138450
TU186564 lncRNA upstream 55493 34150598 ~ 34150826 (+) True G138444
TU186588 lncRNA downstream 101847 34308579 ~ 34309531 (+) True G138465
TU186600 lncRNA downstream 238390 34445122 ~ 34453763 (+) True G138477
TU186645 lncRNA downstream 254949 34461681 ~ 34461939 (+) True G138510
XR_005641226.1 lncRNA downstream 613673 34820405 ~ 34824367 (+) True LOC120571427
XR_005641227.1 lncRNA downstream 677563 34884295 ~ 34887973 (+) True LOC120571431
XM_039820674.1 mRNA upstream 17894 34180802 ~ 34188425 (+) True LOC120571619
XM_039820673.1 mRNA upstream 27996 34163590 ~ 34178323 (+) True LOC120571618
XM_039820672.1 mRNA upstream 44263 34157845 ~ 34162056 (+) True LOC120571616
XM_039819638.1 mRNA upstream 81327 34112095 ~ 34124992 (+) True LOC120570951
XM_039821255.1 mRNA upstream 112074 34086043 ~ 34094245 (+) True LOC120572050
XM_039819640.1 mRNA downstream 206625 34413357 ~ 34428090 (+) True LOC120570953
XM_039820874.1 mRNA downstream 307105 34513837 ~ 34521390 (+) True LOC120571787
XM_039820878.1 mRNA downstream 317538 34524270 ~ 34536470 (+) True LOC120571790
XM_039820876.1 mRNA downstream 333345 34540077 ~ 34573377 (+) False LOC120571788
XM_039820875.1 mRNA downstream 355343 34562075 ~ 34573377 (+) True LOC120571788
TU186310 other upstream 207630 33969778 ~ 33998689 (+) True G138322
unassigned_transcript_658 other upstream 207719 33986779 ~ 33998600 (+) True LOC120570948
unassigned_transcript_656 other upstream 226369 33977509 ~ 33979950 (+) True LOC120570947
TU186299 other upstream 226453 33977556 ~ 33979866 (+) False G138322
unassigned_transcript_653 other upstream 233876 33755301 ~ 33972443 (+) True LOC120572047
TU186657 other downstream 357840 34564572 ~ 34573207 (+) False LOC120571788
TU186960 other downstream 1092560 35299292 ~ 35314797 (+) False mllt11
TU186964 other downstream 1092560 35299292 ~ 35316864 (+) False mllt11
TU186965 other downstream 1092560 35299292 ~ 35316864 (+) True mllt11
TU186967 other downstream 1097039 35303771 ~ 35316864 (+) False mllt11

Expression Profile