RNA id: XM_039820875.1


Basic Information

Item Value
RNA id XM_039820875.1
length 2985
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120571788
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 34540077 ~ 34573377 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACGTGTTGTGTTGTCCTCTACAGATGTGATTCCTTGAACAACATTCAACAAATCTCTGCCTGAAGTAACTCCTTCCAGCGGTGGTCCTAAACATTGGCATCATGCCAGCAATGGGAGGTTTGTCTTTGTACTACATAAAGACACTTGTAGTCTTAATTCTGTGTCTAGGGCATCACCTGAACCCTTCCCTGGCTTATTCTCTGAAAAACTGCTGCATCGGTTATTCTAACGACGCCTTGGCTGATGTTGTTTTGCATTGCTCGCAACATCATCTTGTATCTGTCCCTGATGACATACCCAGAGATGTGAATGTATTGTATCTCTCGATCAATCAGCTTGAACAGATACACAGGGATGATTTCCGGGACATGTCAAAGCTTAGAGTTTTGTCACTGGACAATAATCAGATTACTCACGTGGACGATGGATCTTTCATCCATTTGATTGCGTTATCAAGGCTCCACATGGCCTATAACAAACTCAGCGATCTGACAGGTAACCTCTTTCAGGGACTGTTCAACCTTACCATGCTTGATCTCTCCGGTAACAACATTCAGTCCATTCATACCTCGGCCTTTCAGTCTCTGTCCAGATTAGAAACCGTGATTTTAGACTCAAACAAGCTGCAAAAAGTCGCTGACATTCAGCCCATCCTACAACTACCACTTATACAGAAACTTACTATTACACGTAATCTATTTCCCTCATTTCAGACCAACGATCTGCTGCTGAATGAGCCCTCAAGCCTGAAGGTGTTAGATTTTTCGAATGATGTGTTTGAAAAGTTCAGCATCACAACAAACATCTTTCCTCACCTTGAGATGATAGACTTTTCTATGTCTGGCCAAGTTGCCGGCTGGAAATGGGACATTCCTGACAAGACTTTACTCAGGAACATAACTCAGCTGTATTTTAATTCCCCGTGTATTGCTTTCAAAGAGATCCGAAAAGTCCTGCAGAGCCTCGACTCACTGATGCATCTGAGACTGAATTATATGGAGAAGTGGATCAAAAAAGGTCTCCTAGCTACGGTTTGCAAGATACCGACACTTGAGAAGCTGGATCTGTATTGGAACAAAGTCCCCAATATAAGTGAAAAGCTTGTAACTTGCTCTCAGCTGAGTGAGCTTGATTTGTCATCTACTTCAATGACTGAACTGTCTAAAGGCTCGATTCGACTGATGAAGCAACTGAGTTCCCTAAATTTAAAGAATAACTTCCTCGCCAAGGTGCCAGATGACATTCggactctctcctctctcaagATCCTAAATATTGGTGTCAATGCTATTTCTGAGTTGAGCTGTGAGGATTTCACAAACACAACGCGCCTCAGAGAGCTTCATCTGCACAACAACCACATTGCCAAACTGGACAGATGTGTCTTTGAAAGTCTTAATGACCTGAAGATTTTAGATATGAGCGACAACCTGCTGTGGACATTCGGAGACGCCTTCAAAATAGGCCTGAAGAAGCTTGAGTTCTTGGATCTGAGCAACAACTTTGTACTTCTTCTTGATAAGGGGGATTTTCAAAGTTTAGGGTCCTTAAAATATTTGGATGTGGTGTCAAAACATATCTGGAGCGTGACACATAAGGCTTTCGATGGATTGAATAACCTGCGTAACCTAAGTGTATCTCTTCCATTtgaatttgaaaataaattcagAGGTTTACAGCAGTTGGAAAATCTTACAATTTACTTCATTAGTGACAGTTTCAAAGGTCCTCAACCAAACAATTATAAAgctttatttcatttaaaatccATGACATTTCTCACAGTAATATGCAAGGGTTTTCCCCTTGAGATACCAGAAATTCTCCAGGCTATGAAACATTTAGAAGACTTCACAGCTGAGAATTTCTTCATTTCTGGACCAGATGTGGACACTTTTCAATACAATCGCCAGCTTAAAAGTTTGACAATCAGACGGACTGATCTGTCCGACTTGGATCCTAGACTGTTTCAGCCAATGCCGCTCCTGCAGGTCCTTGATTTCTCCGAAACTAAGATAAAGTCTTTGGACTTTCTGTTCCAGGCTGATCTATATGCACTCAGATGTTTGAAACTAAGTGACAATGAGATAACTGTGATCAATGAGACGGTCTTCCAATTTCTCCCTGCACTAACATACCTCGATGTGGAAAACAACCCTTTTACTTGTGACTGCTCTAACGCCGGCTTTATCCAATGGGTGAAGAACAACAACCAAACTCAGGTTGTTAACGCCTACCAATACACATGTTCCTTCCCTGTGGCTGAACAAGGAAACAAGCTTCTGGACTTTGACATCCTGTCCTGTTGGATGGACGTTAGCTTCCTCTGCTTCATTTCCAGCACGTGCCTGGTTGTTTTTACACTCCTCGCATCCTTCATCTACCACTTTCTGAGGTGGCAGCTAGCCTATGCCTACCACCTTTTCCTGGCCTTTCTATATGACAGCAGGAAGAGAAAGGCGGGAGCTTGTCATCTGTATGACGCCTTCATCTCCTACAATGTTGACGACGAGGCCTGGGTTTACCAAGAGATGCTTCCGGCACTGGAAGGAGAGCAGGGCTGGAGACTCTGTCTGCACCACAGAGACTTCCAACCAGGGAAACCGATCGTAGAGAACATCATAGATGCCATATATGGCAGCAGGAAGACCATCTGTGTGATCACCCGGCGTTACCTGCAGAGCGAGTGGTGCTCCAGAGAGATCCAGATGGCCAGCTTCCGTCTGTTCGACGAACAGAAAGATGTGTTGGTCCTGCTGTTTCTGGAGGAGATCCCGGCCCACCAGCTGTCTCCTTACTACCGCATGAGGAAGCTGGTGAAGAAACGCACCTACCTGAGTTGGCCCAAGGCCGGCCATCACACGGGAGTCTTCTGGCAGAACGTAGGGAGAGCTCTTGAGACGGGGGACGCTCCCACCGAGACCGCTGACCTGCTCACTGGACCGGCAGGACGCTGAAAAACATAAGTtggaaaaaagctaca

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186645 lncRNA upstream 100136 34461681 ~ 34461939 (+) True G138510
TU186600 lncRNA upstream 108312 34445122 ~ 34453763 (+) True G138477
TU186588 lncRNA upstream 252544 34308579 ~ 34309531 (+) True G138465
TU186577 lncRNA upstream 355343 34206319 ~ 34206732 (+) True G138456
TU186575 lncRNA upstream 358340 34202931 ~ 34203735 (+) True G138454
XR_005641226.1 lncRNA downstream 247028 34820405 ~ 34824367 (+) True LOC120571427
XR_005641227.1 lncRNA downstream 310918 34884295 ~ 34887973 (+) True LOC120571431
TU186745 lncRNA downstream 383506 34956883 ~ 35000229 (+) False G138586
TU186743 lncRNA downstream 408205 34981582 ~ 35006398 (+) True G138586
TU186758 lncRNA downstream 457637 35031014 ~ 35031789 (+) True G138599
XM_039820878.1 mRNA upstream 25605 34524270 ~ 34536470 (+) True LOC120571790
XM_039820874.1 mRNA upstream 40685 34513837 ~ 34521390 (+) True LOC120571787
XM_039819640.1 mRNA upstream 133985 34413357 ~ 34428090 (+) True LOC120570953
XM_039820674.1 mRNA upstream 373650 34180802 ~ 34188425 (+) True LOC120571619
XM_039820673.1 mRNA upstream 383752 34163590 ~ 34178323 (+) True LOC120571618
XM_039820873.1 mRNA downstream 5080 34578457 ~ 34589114 (+) True LOC120571785
XM_039820877.1 mRNA downstream 29330 34602707 ~ 34608729 (+) True LOC120571789
XM_039820652.1 mRNA downstream 56667 34630044 ~ 34638294 (+) True LOC120571600
XM_039820322.1 mRNA downstream 69454 34642831 ~ 34649286 (+) True LOC120571392
XM_039819641.1 mRNA downstream 101288 34674665 ~ 34683726 (+) True LOC120570955
TU186310 other upstream 563386 33969778 ~ 33998689 (+) True G138322
unassigned_transcript_658 other upstream 563475 33986779 ~ 33998600 (+) True LOC120570948
unassigned_transcript_656 other upstream 582125 33977509 ~ 33979950 (+) True LOC120570947
TU186299 other upstream 582209 33977556 ~ 33979866 (+) False G138322
unassigned_transcript_653 other upstream 589632 33755301 ~ 33972443 (+) True LOC120572047
TU186960 other downstream 725915 35299292 ~ 35314797 (+) False mllt11
TU186964 other downstream 725915 35299292 ~ 35316864 (+) False mllt11
TU186965 other downstream 725915 35299292 ~ 35316864 (+) True mllt11
TU186967 other downstream 730394 35303771 ~ 35316864 (+) False mllt11
TU186968 other downstream 730394 35303771 ~ 35316864 (+) False mllt11

Expression Profile