RNA id: TU186898



Basic Information


Item Value
RNA id TU186898
length 776
lncRNA type sense_over
GC content 0.50
exon number 5
gene id LOC120570963
representative True

Chromosome Information


Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 35518916 ~ 35614565 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tagaataataatctgagtctgtcagaacGTTTAGTGGACGCTGAAAGGGTCCAGATTGAAACCTAGCGAAGGTCCCCTTTAATATCTGGTGTTTTCAGAGTCCAGAGGTGGTGGCTTCTGTGGGGAAACTGAGCTACAACCAGCTGGTGGAGAAAATCATCGACTACAAACACTCAGCAGACAGCAGCCGAGTCAGTGAAGgtctGGTAGCAGAGCAGTTCCTAGAGTCCACAGCACCCAGCTCTCCTATCACGGTCTGTGTGAACTCAACACGACGGCCAAGGAGGGAGAGATCTCTGTGTTCTTCAGAAACAACCACTTCAGTACCATGATCAAACACAagAGTCCAGAGGTGGTGGCTTCTGTGGGGAAACTGAGCTACAACCAGCTGGTGGAGAAAAATCATCGACTACAAACACTCAGCAGACAGCAGCCGAGTCAgtgaaggtctGGTAGCAGAGCAGTTCCTAGAGTCCACAGCGACCCAGCTCTCCTATCACGGTCTGTGTGAACTCAACACGACGGCCAAGGAGGGAGAGATCTCTGTGTTCTTCAGAAACAACCACTTCAGTACCATGATCAAACACAaggtggagacacacacacacacacacacacacacacacacacacacacacacacacacaccacacacacacacacacacacacacacacacacacacacacacacacacagagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU186996 lncRNA upstream 1597 35422176 ~ 35517319 (+) False LOC120571398
TU186997 lncRNA upstream 1597 35498818 ~ 35517319 (+) False LOC120571398
TU186927 lncRNA upstream 2299 35439909 ~ 35516617 (+) False LOC120571400
TU187003 lncRNA upstream 28002 35488607 ~ 35490914 (+) False G138781
TU187008 lncRNA upstream 28002 35489684 ~ 35490914 (+) False G138781
TU186920 lncRNA downstream 2095 35616660 ~ 35704687 (+) True G138725
TU187025 lncRNA downstream 19872 35634437 ~ 35635272 (+) False G138795
TU187024 lncRNA downstream 20101 35634666 ~ 35635272 (+) True G138795
TU187029 lncRNA downstream 50530 35665095 ~ 35665716 (+) True G138799
TU187032 lncRNA downstream 72154 35686719 ~ 35740888 (+) True G138801
XM_039820368.1 mRNA upstream 3134 35515121 ~ 35515782 (+) True LOC120571424
XM_039819648.1 mRNA upstream 20424 35496877 ~ 35498492 (+) True LOC120570962
XM_039820329.1 mRNA upstream 51746 35447774 ~ 35467170 (+) False LOC120571395
XM_039820328.1 mRNA upstream 51748 35447774 ~ 35467168 (+) True LOC120571395
XM_039820332.1 mRNA upstream 59307 35457547 ~ 35459609 (+) True LOC120571399
XM_039820382.1 mRNA downstream 188749 35803314 ~ 35803883 (+) False LOC120571439
XM_039819652.1 mRNA downstream 339290 35953855 ~ 35955159 (+) True LOC120570967
XM_039820380.1 mRNA downstream 341852 35956417 ~ 35958468 (+) True LOC120571435
XM_039820386.1 mRNA downstream 365328 35979893 ~ 36004234 (+) True riok1
XM_039820385.1 mRNA downstream 395422 36009987 ~ 36011497 (+) False LOC120571445
TU186887 other upstream 21298 35439291 ~ 35497618 (+) True G138692
TU186837 other upstream 133453 35378839 ~ 35385463 (+) False mindy1
TU186852 other upstream 141878 35372011 ~ 35377038 (+) False LOC120570961
TU186967 other upstream 202052 35303771 ~ 35316864 (+) False mllt11
TU187041 other downstream 92335 35706900 ~ 35724402 (+) True G138806
TU186903 other downstream 188739 35803304 ~ 35818966 (+) True LOC120571439
TU186870 other downstream 450806 36065371 ~ 36257319 (+) True G138676
TU186931 other downstream 492152 36106717 ~ 36215827 (+) False LOC120571442
TU186906 other downstream 523582 36138147 ~ 36215671 (+) True G138711

Expression Profile