RNA id: TCONS_00006781


Basic Information

Item Value
RNA id TCONS_00006781
length 680
RNA type processed_transcript
GC content 0.50
exon number 4
gene id XLOC_003461
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24994705 ~ 25043214 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGTTCACGTGCACGCGGCAGCAGAGGCGCGCGAGCATTCAGAGCTCTGAACCCATCACGAAGACCTCGCGCAGGACGTCCGACACAACGTGGAGATAAAGTTTTTACCATCTCTACCCTGACTTTTACACTATTTGTGGTTTAACCCTGCTATGTGAGGAGAAATGGCCGAGACTACCGATGATTGGGTGGAAATCCTGGAGCCTCGTCTCAGAGAGTACATGTATGTGAATCTGACCACGGGAATATGTGGTTGGGAACCGcccaaaaatgtattaatccgCCCAGCTGATCACAACCAATGGTGGGAACTTTTTGACCGTGTGACTGGCAGGCCATGAAACGCAACACAACGTTAGAACATAAAACTGATGAGGACACTAAGGAAAGGCAACATGGGAATCAGTCCACAGGCAGTCAAGATAGACACACCCCATTACCACCCGTGGAGCCCTGCACTAAAGAGCCAGAATGTGCCAGCAAAGAGCCTAAAGAACCAGAAATGGACAACAGACAGAAGCCAGACATCCACGTTTCAGACATCAACAAAGACTCACTCAGGCAAGAGCAAAGAGACTCATCTCAGAAGTGGCAGCCCTCTCCTGGATCTAAAGCCGCCATGTTGGTAAAGGTCAGCAGCATCGGCAGGAGCCAGACTAGAGAAACCAGAGGAACTTCT

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-4 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Orthologous to human ARHGAP39 (Rho GTPase activating protein 39).

Ensembl:

ensembl_id ENSDART00000141832

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006773 lncRNA upstream 88858 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00006744 lncRNA upstream 650429 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00008611 lncRNA upstream 650717 24339396 ~ 24344016 (+) False XLOC_003446
TCONS_00008401 lncRNA downstream 33965 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00008612 lncRNA downstream 156360 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008613 lncRNA downstream 156595 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA downstream 186159 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006796 lncRNA downstream 187043 25212540 ~ 25226926 (+) True XLOC_003466
TCONS_00006775 mRNA upstream 1508 24907469 ~ 24993225 (+) False XLOC_003460
TCONS_00006778 mRNA upstream 2435 24966182 ~ 24992298 (+) False XLOC_003460
TCONS_00006776 mRNA upstream 25076 24925434 ~ 24969657 (+) False XLOC_003460
TCONS_00006777 mRNA upstream 28370 24957858 ~ 24966363 (+) False XLOC_003460
TCONS_00006771 mRNA upstream 88469 24900123 ~ 24906264 (+) False XLOC_003459
TCONS_00006786 mRNA downstream 18585 25044082 ~ 25063586 (+) True XLOC_003462
TCONS_00006787 mRNA downstream 39022 25064519 ~ 25139061 (+) False XLOC_003464
TCONS_00006789 mRNA downstream 75723 25101220 ~ 25140425 (+) False XLOC_003464
TCONS_00006791 mRNA downstream 86349 25111846 ~ 25140425 (+) False XLOC_003464
TCONS_00006790 mRNA downstream 86349 25111846 ~ 25140425 (+) False XLOC_003464
TCONS_00006779 other upstream 11235 24980919 ~ 24983498 (+) True XLOC_003460
TCONS_00006774 other upstream 91523 24901878 ~ 24903210 (+) True XLOC_003459
TCONS_00006769 other upstream 111388 24881309 ~ 24883345 (+) True XLOC_003457
TCONS_00006746 other upstream 413619 24580579 ~ 24581114 (+) True XLOC_003447
TCONS_00006735 other upstream 652670 24339385 ~ 24342063 (+) False XLOC_003446
TCONS_00006785 other downstream 12776 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006788 other downstream 70700 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006802 other downstream 270879 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006814 other downstream 452246 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006817 other downstream 455610 25481107 ~ 25482970 (+) False XLOC_003476

Expression Profile

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