RNA id: TU187542


Basic Information

Item Value
RNA id TU187542
length 815
lncRNA type intronic
GC content 0.33
exon number 1
gene id G139140
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 37542239 ~ 37543053 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTGacttattgtattttaaaaaagggTCCATCTAGGGACATGCATTGCAATTTATCTTAggctatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagattgattttaattaattatgtCTAAAATACACTTTTAAATCCTTGAAAGCTGTATTGTCTTTATGAGAacacaataaagggagatttcactttttttttttttcatatgtacACCACATTAGACCAGGTCCAGGTCCAAAACCACAtgcctagacttgtcaaatctgGACCAAAATATCCCAGAGGGGCTAAAgattcttaaaaacacagtttcagatttgtgaaagcttttttCTATTTGTGATTTCCCTGTTCTTGTTCCTATGTAGACCACATCAGACACATGAGAATAAGTGAATTCTtccttttaatattattatttttataaaggTCTCAAATGTAATACCTGAAGGTCTTAAAAGTCTGAAAATGTGACTggttgaaacctgcagaaactctgaTATTAAGACTTTTATGTGTTCacattttctgttgttgttctgCCCTCTAGTGTCAGAAACCAGGAGTGACACTCTGGGTCCACTTCCTGTGGGGAACAGTTTTCACACTAAAAGactgacattattattattattattattcccctTTTTAAAGGCGAGATGTTACGATATATCTTACAGCTTGGCACACAGACTCTTGTCCatgtgatttttcttttgctgTTTCAAAAGTTCATTAAAGCACTATCAAACCCTTTGTTTTTTCTTAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187804 lncRNA upstream 92984 37446714 ~ 37449255 (+) True G139307
TU187805 lncRNA upstream 127040 37414348 ~ 37415199 (+) True G139308
TU187632 lncRNA upstream 158267 37306166 ~ 37383972 (+) False G139160
TU187638 lncRNA downstream 10438 37553491 ~ 37554500 (+) True G139165
TU187829 lncRNA downstream 11698 37554751 ~ 37555441 (+) False G139326
TU187826 lncRNA downstream 11983 37555036 ~ 37555916 (+) True G139326
TU187827 lncRNA downstream 12512 37555565 ~ 37555916 (+) False G139326
TU187828 lncRNA downstream 12512 37555565 ~ 37555980 (+) False G139326
XM_039819671.1 mRNA upstream 19562 37497634 ~ 37522677 (+) True LOC120570989
XM_039819769.1 mRNA upstream 33543 37507022 ~ 37508696 (+) True LOC120571065
XM_039819670.1 mRNA upstream 49696 37478550 ~ 37492543 (+) True LOC120570988
XM_039819669.1 mRNA upstream 65648 37458588 ~ 37476591 (+) True LOC120570987
XM_039819776.1 mRNA upstream 104881 37436256 ~ 37437358 (+) True LOC120571071
XM_039819674.1 mRNA downstream 70068 37613121 ~ 37616487 (+) True LOC120570991
XM_039819758.1 mRNA downstream 795384 38338437 ~ 38340755 (+) True LOC120571056
XM_039819686.1 mRNA downstream 895619 38438672 ~ 38440490 (+) True LOC120571002
XM_039819754.1 mRNA downstream 919956 38463009 ~ 38465285 (+) True LOC120571053
XM_039819760.1 mRNA downstream 1030768 38573821 ~ 38593537 (+) True LOC120571058
TU187628 other upstream 19107 37511709 ~ 37523132 (+) False LOC120570989
TU187637 other upstream 95655 37443392 ~ 37446584 (+) True G139164
XR_005641164.1 other upstream 131059 37400292 ~ 37411180 (+) False LOC120571062
TU187560 other upstream 166532 37361943 ~ 37375707 (+) False G139141
TU187611 other upstream 425768 37067758 ~ 37116471 (+) True G139152
TU188274 other downstream 324856 37867909 ~ 37873124 (+) True G139586
TU188180 other downstream 883697 38426750 ~ 38430454 (+) True G139581
TU188294 other downstream 1050522 38593575 ~ 38594662 (+) False G139594
TU188586 other downstream 1395201 38938254 ~ 38942817 (+) False LOC120571012
TU188606 other downstream 1429657 38972710 ~ 38999473 (+) False G139838

Expression Profile