RNA id: TU187662


Basic Information

Item Value
RNA id TU187662
length 1809
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G139185
representative False

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 36809209 ~ 36837240 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgaCAGAAAGAGACCTTTTtattgttaatcacaattatATCAGAGACAATTATATGTAGAGAACCATGTTGAAGTGTTCCAGTACAATGTGTTGGATGTGTGTAGTAGTTTCTGTGTTGGTGGGCCATAGTCGTTGCATGTTGAGCCCAGTAGAGGGCAGCACATACCAATATATTATAGCAGGCTGAGgtaatgatagatagatagatagatagatagatagatagatagatagatagatagatagataggccCGAAATCCCTCACAAAGAACACCCATAACTTCTGTCTCCCTGTCAACAACTCCACCCTGTCTCCATCCCCACACATCCGTAACCAGGGAGTCATCTTCGACAGCAACCTCACTTTTGAAAACCACATCAACCAAATAACCAGAACTGCCTTCTTTCACCTCAAAAACATTGCCCGTCTCCGCCCATCACTCCCCTTCTTTGATTCACGCCTTCATCACTTCCAGAATTGACTAATGCAACAGCATCGTCTATGGTTCACCTGCAAAAGCCTTAAATAAACTCCAATACATCCAAAACAGAGCTTTCACCAttgcagccccctccctctggacctccctacccatacacatccgtgactgtactgacctggacacattcaaaacacacctcttcagattagctttcactgtttttaattgcttctAATGTGCTTGTTTTATgggttggttttattgcttatctgtttttaatgtgatatacagtatgtactggttttactgtaaagtgtctgagtaccatgaaaagtgctatataaaatgtattattattaaaattataataataataataataataataataataataataataatagatagactcccaaattgggaaatttcaGTCCTACAGCaagaaaatatcagacacacaggacacatacagaatatacatgaaataataaataggataaaatacaagaacaaatattcaCTCACTCATTACTCAAACtcagcttctgactggctagtagtccttacctagctactgccagggcacgccctcatactctgcttctgactggctagtagtccttacctagctactgccagggcacgccctcatactctgcttctgactggctagtagtccttaactagctactgagcatatGCGACTCCGAACAAAGATGGaagagaagtgagatgtctcacactgtagctaaaacagagagctcaacacacagggtgaaaagaggactCAACCCTGAAAGCCACAGGAACTTAGTTTGGCGAGAAAGATATGATTAACTTCTTGGAAAGCTTTTGATGAATACAGAAACATTCCTTCTGTGTATTCACGGTTATATAGGGCAGATGTAATCCTATCAATAAGTTGTAAAATAGTCAAAAAAATCTATGTGgctctccttccaatcagcactatcatcagtctcaggatcagaagagtctccagtctggtcttcagtctctggttgtaaaagtggatgtgagttcctggctggttctggtcctccacagtcctctccatcagcttctgtttccatgtgttgagtttgtatctgatgaagctgtgaggactgagcttcctcttcatcatctttactcttcacagggacaggagtgaatgggaatttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgctccacatttcctcctgttcctctttaatgtgtggggggggctctggctcctgctggtccacactggagctacactcctgctgctcagggggaacctcttctttatCAACCAACAGCTGCTGCACATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187664 lncRNA upstream 22464 36675176 ~ 36812215 (+) True G139187
TU187690 lncRNA upstream 39142 36773184 ~ 36795537 (+) True G139210
XR_005641182.1 lncRNA upstream 105600 36724886 ~ 36729079 (+) True LOC120571092
TU187666 lncRNA upstream 154877 36679133 ~ 36679802 (+) True G139189
TU187639 lncRNA upstream 170758 36661407 ~ 36663921 (+) True G139166
XR_005641169.1 lncRNA downstream 85495 36922735 ~ 36931556 (+) True LOC120571079
XR_005641181.1 lncRNA downstream 101032 36938272 ~ 36942471 (+) True LOC120571091
TU187747 lncRNA downstream 192080 37029320 ~ 37029792 (+) True G139257
TU187569 lncRNA downstream 280146 37117386 ~ 37187736 (+) True G139141
XR_005641178.1 lncRNA downstream 308734 37145974 ~ 37151893 (+) True LOC120571088
XM_039819767.1 mRNA upstream 72744 36748017 ~ 36761935 (+) True LOC120571063
XM_039819753.1 mRNA upstream 73778 36758305 ~ 36760901 (+) True LOC120571052
XM_039819771.1 mRNA upstream 103441 36729393 ~ 36731238 (+) True LOC120571067
XM_039819761.1 mRNA upstream 175495 36657374 ~ 36659184 (+) True LOC120571059
XM_039819658.1 mRNA upstream 228856 36558860 ~ 36605823 (+) True LOC120570975
XM_039819759.1 mRNA downstream 125363 36962603 ~ 36984154 (+) True LOC120571057
XM_039819773.1 mRNA downstream 150713 36987953 ~ 36989697 (+) True LOC120571069
XM_039819762.1 mRNA downstream 167367 37004607 ~ 37006882 (+) True LOC120571060
XM_039819660.1 mRNA downstream 219554 37056794 ~ 37061670 (+) True LOC120570977
XM_039819661.1 mRNA downstream 237445 37074685 ~ 37096687 (+) True LOC120570978
TU186869 other upstream 302236 36529301 ~ 36532443 (+) False LOC120571613
TU186859 other upstream 318097 36512606 ~ 36516582 (+) True G138668
TU187150 other upstream 328745 36493103 ~ 36505934 (+) True G138883
TU186858 other upstream 486052 36338410 ~ 36348627 (+) False gabpb2a
TU186888 other upstream 587595 36229330 ~ 36247084 (+) True G138693
TU187744 other downstream 150722 36987962 ~ 36989638 (+) False LOC120571069
TU187538 other downstream 209761 37047001 ~ 37056722 (+) True G139139
TU187611 other downstream 230518 37067758 ~ 37116471 (+) True G139152
TU187560 other downstream 524703 37361943 ~ 37375707 (+) False G139141
XR_005641164.1 other downstream 563052 37400292 ~ 37411180 (+) False LOC120571062

Expression Profile