RNA id: TU187664


Basic Information

Item Value
RNA id TU187664
length 322
lncRNA type read_through
GC content 0.48
exon number 2
gene id G139187
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 36675176 ~ 36812215 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGaagcttcatcatcttcactcttcacagggacaggagtgaatgggaacttcaAcccttgaagctggtctccctcctgactgctccacagttcctcctgttcctctttaatgtgtggggggggctctggctcctgctggtccacactggagctacactcctgctgctcctcttcacCAACAATCACTTTAAGAACATCTGGAGGTAAaactgaaacacagacagacagccgtTAATGGGAGTCTCAACAATACTTTGCTAATTAGCCGATTTCACTGTGATAAGGACGCAGCTTCATAATGAAATCATCTGATTTATCCCGG

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187639 lncRNA upstream 11255 36661407 ~ 36663921 (+) True G139166
TU187644 lncRNA upstream 41789 36632785 ~ 36633387 (+) True G139171
TU187163 lncRNA upstream 77314 36596667 ~ 36597862 (+) True G138894
TU186917 lncRNA upstream 83960 36553567 ~ 36591216 (+) True G138722
TU186854 lncRNA upstream 151178 36518349 ~ 36523998 (+) True G138665
TU187662 lncRNA downstream 22464 36834679 ~ 36837240 (+) False G139185
XR_005641169.1 lncRNA downstream 110520 36922735 ~ 36931556 (+) True LOC120571079
XR_005641181.1 lncRNA downstream 126057 36938272 ~ 36942471 (+) True LOC120571091
TU187747 lncRNA downstream 217105 37029320 ~ 37029792 (+) True G139257
TU187569 lncRNA downstream 305171 37117386 ~ 37187736 (+) True G139141
XM_039819761.1 mRNA upstream 15992 36657374 ~ 36659184 (+) True LOC120571059
XM_039819658.1 mRNA upstream 69353 36558860 ~ 36605823 (+) True LOC120570975
XM_039820670.1 mRNA upstream 142641 36526529 ~ 36532535 (+) False LOC120571613
XM_039820669.1 mRNA upstream 142641 36528840 ~ 36532535 (+) True LOC120571613
XM_039820667.1 mRNA upstream 302955 36362325 ~ 36372221 (+) True anp32e
XM_039819759.1 mRNA downstream 150388 36962603 ~ 36984154 (+) True LOC120571057
XM_039819773.1 mRNA downstream 175738 36987953 ~ 36989697 (+) True LOC120571069
XM_039819762.1 mRNA downstream 192392 37004607 ~ 37006882 (+) True LOC120571060
XM_039819660.1 mRNA downstream 244579 37056794 ~ 37061670 (+) True LOC120570977
XM_039819661.1 mRNA downstream 262470 37074685 ~ 37096687 (+) True LOC120570978
TU186869 other upstream 142733 36529301 ~ 36532443 (+) False LOC120571613
TU186859 other upstream 158594 36512606 ~ 36516582 (+) True G138668
TU187150 other upstream 169242 36493103 ~ 36505934 (+) True G138883
TU186858 other upstream 326549 36338410 ~ 36348627 (+) False gabpb2a
TU186888 other upstream 428092 36229330 ~ 36247084 (+) True G138693
TU187744 other downstream 175747 36987962 ~ 36989638 (+) False LOC120571069
TU187538 other downstream 234786 37047001 ~ 37056722 (+) True G139139
TU187611 other downstream 255543 37067758 ~ 37116471 (+) True G139152
TU187560 other downstream 549728 37361943 ~ 37375707 (+) False G139141
XR_005641164.1 other downstream 588077 37400292 ~ 37411180 (+) False LOC120571062

Expression Profile