RNA id: TU188246


Basic Information

Item Value
RNA id TU188246
length 1503
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G139586
representative False

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 37686538 ~ 38256966 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctcgttCGAACGTGTAGTGAACATCGTGCAGATggatgaaaatatattttaataatttattttagtgtcagaatgttctggagacATGTGGCTTGTTGAAGAACGGCTCCGATATTTACTTTGATGACTACGGGGGTGAAAGGATCGCTCATAAtagtgaacgtgaacacaggTTCGTAATAgaatagatctttattgtcattgttttcaacaacGAAACACAGTTTAGCAGCTCTCAATAATGACAGTTAcatcacagacaaacagaaatataaaatgtaaccctcatgttgtccttgggtcaaatttgaaagtcaaagtttctacatcagaaaattgggtttctttcaagaAAATTGCCCAAATATGACACAGACGCTTTTGCAAGTAAAGTTAAGGATCAGGAATTTGgttgttatattaaaatcttttatagcatttggaaaaaaatgtaatggtttcaaaacagtatttgtcaaaataattcatgatttcagcttttttaaactcaaaaattaggtatcaTTGCATATAATTCAGGTTTATTGATTAGCAAttccaaaaaaaagtgtaaaactagtggtaatacgTTTTTACCTGGGAGGACAAGTTGCATGggcgacgggaagacaacacaagggttaaatagtaaaatataataatcaagATAAATAAACACGATGAAGtggcactatatatatatatatatatatatatatacccaaCCCTACTTAAAAGGCACAAACGTTATTCCATTTCaccagtctcaggttcagaagagcctccagtctggtcttcagtctctggttgttaaagtggatgtgagttcctggctggttctggtcctccacagtcctctccatcagcttctgtttccatcggaccaacacatttatgtgtgCTGACATCAGAACTCTgggcaaatcttttgttacaaacactgcagctgaatcgTTTCTCTCCTATGTGGATTCTCAGGTGTGACCGTAAAGCTCCATTGTGCATAAAAGATtttttacagactgagcagctgacaggtttctctcctgtgtggattctcatgtgtgacCATAAAGCTCCACTGtgtataaacatttttttacaaactgagcagataaaaggtttttctcctgtgtagattttcatgtgtttttgtaAACTTCCTCTCGGTCTAAAATATTTAGTAAAATCTGAGAAGCTaaaaggcttctctcctgtgtgagttatcatgtgtctcttcaggtGTCCCCCTTCAGTAAAAGCtttaccacactcagagcagctgaatgttttcttacatcttgaatcatgtttcagagagtttaaagctgactgaggttctctggtctccttccaatcagcactgtcatcattCTCAGgttcagaagagtctccagtctggtcttcagtctctggttgtaaaagtggatgtgagttcctgacTGGTTCTGggcctccacagtcctctccatcagattctgtttccatgtgttgagtttgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188372 lncRNA upstream 11236 37943721 ~ 37966266 (+) True G139649
TU188232 lncRNA upstream 20535 37954814 ~ 37956967 (+) False G139586
TU188264 lncRNA upstream 24401 37708618 ~ 37953101 (+) False G139586
TU188256 lncRNA upstream 43565 37925493 ~ 37933937 (+) False G139586
TU188271 lncRNA upstream 68818 37686538 ~ 37908684 (+) False G139586
TU188380 lncRNA downstream 10701 38021755 ~ 38022886 (+) True G139656
TU188395 lncRNA downstream 44529 38055583 ~ 38071025 (+) False G139662
TU188397 lncRNA downstream 44529 38055583 ~ 38071025 (+) False G139662
TU188398 lncRNA downstream 44529 38055583 ~ 38071025 (+) False G139662
TU188401 lncRNA downstream 44529 38055583 ~ 38112971 (+) True G139662
XM_039819674.1 mRNA upstream 361015 37613121 ~ 37616487 (+) True LOC120570991
XM_039819672.1 mRNA upstream 425604 37527705 ~ 37551898 (+) True LOC120570990
XM_039819671.1 mRNA upstream 454825 37497634 ~ 37522677 (+) True LOC120570989
XM_039819769.1 mRNA upstream 468806 37507022 ~ 37508696 (+) True LOC120571065
XM_039819670.1 mRNA upstream 484959 37478550 ~ 37492543 (+) True LOC120570988
XM_039819758.1 mRNA downstream 327383 38338437 ~ 38340755 (+) True LOC120571056
XM_039819686.1 mRNA downstream 427618 38438672 ~ 38440490 (+) True LOC120571002
XM_039819754.1 mRNA downstream 451955 38463009 ~ 38465285 (+) True LOC120571053
XM_039819760.1 mRNA downstream 562767 38573821 ~ 38593537 (+) True LOC120571058
XM_039819744.1 mRNA downstream 601543 38612597 ~ 38614881 (+) True LOC120571044
TU188274 other upstream 104378 37867909 ~ 37873124 (+) True G139586
TU187628 other upstream 454370 37511709 ~ 37523132 (+) False LOC120570989
TU187637 other upstream 530918 37443392 ~ 37446584 (+) True G139164
XR_005641164.1 other upstream 566322 37400292 ~ 37411180 (+) False LOC120571062
TU187560 other upstream 601795 37361943 ~ 37375707 (+) False G139141
TU188180 other downstream 415696 38426750 ~ 38430454 (+) True G139581
TU188294 other downstream 582521 38593575 ~ 38594662 (+) False G139594
TU188586 other downstream 927200 38938254 ~ 38942817 (+) False LOC120571012
TU188606 other downstream 961656 38972710 ~ 38999473 (+) False G139838
TU188607 other downstream 987467 38998521 ~ 38999473 (+) True G139838

Expression Profile