RNA id: TU188264


Basic Information

Item Value
RNA id TU188264
length 2454
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G139586
representative False

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 37686538 ~ 38256966 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTCACTTTATTTCATCCTGGTGGGTACTCAGCATGTCCTGGTGTACCACACCGATCATATCAAACAATTGTATTTCTTTACTGTATTAGCTTTACCTAATTAATGGCATAGGAGACACTATACATGTCAAAAGACCGTAATAATTTTGGTGTCACTGATCATATTACCTTGGAACATAGCAATGCACAAGTgagtttttatagttttatacaGATCATAATATGTCCATCTCAGCTTTGCTTCAAAGAGAAAACTCCTCCGCTCCCTGACAGGAAACACCTTGCTAGGCTAACTTCCCTATGCTACCTCCCTCACATCTCCCTTGTTTAAACTAAAGATAGCTTTCAACctgcacttcctgtctccctgacagagagagaaaagtctCCTCTCAGAGACTGCTGGGCCTAAATTGTGCTTAAACATGATACACAAAATTAAAGCATGACCCCAATGAGTATTGAATAAACTCCCATATTGATACATGATTAATAGTGAATCTTGCTAAACATACGTTACTTAGAAAGAAGTGAATATATGTGTGGGCCCTATAAAATATCGGATGGTTACATTTGTCTGTTTTCTTGATTATATGACAGACATTACAAAACAATatctaataaaatatttaaaataagagtGTACTTTTTCCTACCACACAATATAATGTCTTCTATCTAGATGTTGATACATaaagatttttgtttgatacttaagaagttttgcttggactCTTAAAGGCACAAACATTATTCCATGTCaccagtctcaggttcagaagagtctccagtctggtcttcagtctctggttgtaaaagtgaatgtggatgtgagttcctggctggttctggtcctccacagtcctctccttAAAGAGCAGctaaaaaggtttttctcctgtgtggattctcatgtgtttttgtaaatttccactctgtgtaaaagatgtcttacagactgagcagctaaaaggcttctctcctgtgtgagttctcatgtgtttctTCAGGTGTCCACTTTCGGTGAAAGTTTtatcacactcagagcagcagaaaggtttttctcctgtgtgagttctcatgtgcaTCTTTAAAGCTCCACTGTGTGTAAAtaatttcttacagactgagcagctgaaaggtttttctccagaATGAGTCATCATGTGGTTCTTCAGGTGTCCACTTTCAGTAAAAGCTTttccacactcagagcagctgaaaggtttttctcctgtgtggattctaaTGTGTGACTGTAAATCtccactctgtgtaaaagatttcgTACAGACTGAGCAACTGAAAggcttttctcctgtgtgagttctcatgtgtgaccgtaaatgttcactctgtgtaaaagatttattacaaactgagcagctgaaaggtttttctcctgtgtgactTTTAATGTGTCTCCTTAGATGTGACTTGCGGCCAAATcttctcccacactcagagcagctgaatgttttcttacatcttgaatcatgtttcagagagtttgaagctgactgaggttctctggtctccttccaatcagcactgtcttcagtctcaggttcagaagagtctccagtctggtcttcagtctctggttgtaaaagtggatgcaagttcctggctggttctggtcctccacagtcctcttcATCAGCTTCTGTTACCATCTtaccaacacatttatgtgttttgatATGATAACGCTTGGAAAATCTTTTGtaacaaacactgcagctgaatcttttctctcctgtgtggactacgGCCATGTGTGACCGTAAACTTCCTCTccgtgtaaaagatttcttacaaactgagcagctgaaaggtttttctcctgtgtgagtaaTCATGTGTCTATTCAGATGTGACTTGACgccaaatcttttcccacactcagagcagctaaatggtgtctgacatcttgaatcatgtttcagagagtttaaagctgactgaggttctctggtctccttccaatcagcactgtcatcagtctcaggttcagaagagtctccagtctggtcttcagtttctggttgtaaaagtggatgtgagttcctggctggttctggtcctccacagtcctctccatcagcttctgtttccatgtgttgagtttgtctctgatgaagctgtgaggactgagcttcctcttcatcatcttcactcttcacagggacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgctccacagttcctcctgttcatgTTATGGAACTGTATCTTATCACCTGGATTGTGACTGTGAGAAATACTTGTTGTTCAGTCAGTTACTTAGgttacatctacactactagtCTTCCTTTTCAGCCTTGAAAACTGTTGAAAAGGCTGTTGACTGACATATTAGGGCCCTCTGTGGTGGAATAATGCAACTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187845 lncRNA upstream 96351 37608626 ~ 37612267 (+) True G139339
XR_005641186.1 lncRNA upstream 143549 37556812 ~ 37565069 (+) True LOC120571095
TU187831 lncRNA upstream 148764 37559507 ~ 37559854 (+) True G139327
TU187828 lncRNA upstream 152638 37555565 ~ 37555980 (+) False G139326
TU187827 lncRNA upstream 152702 37555565 ~ 37555916 (+) False G139326
TU188232 lncRNA downstream 1713 37954814 ~ 37956967 (+) False G139586
TU188246 lncRNA downstream 24401 37977502 ~ 38011054 (+) False G139586
TU188224 lncRNA downstream 39340 37992441 ~ 38036141 (+) False G139586
TU188253 lncRNA downstream 39340 37992441 ~ 38011054 (+) False G139586
TU188380 lncRNA downstream 68654 38021755 ~ 38022886 (+) True G139656
XM_039819674.1 mRNA upstream 92131 37613121 ~ 37616487 (+) True LOC120570991
XM_039819672.1 mRNA upstream 156720 37527705 ~ 37551898 (+) True LOC120570990
XM_039819671.1 mRNA upstream 185941 37497634 ~ 37522677 (+) True LOC120570989
XM_039819769.1 mRNA upstream 199922 37507022 ~ 37508696 (+) True LOC120571065
XM_039819670.1 mRNA upstream 216075 37478550 ~ 37492543 (+) True LOC120570988
XM_039819758.1 mRNA downstream 385336 38338437 ~ 38340755 (+) True LOC120571056
XM_039819686.1 mRNA downstream 485571 38438672 ~ 38440490 (+) True LOC120571002
XM_039819754.1 mRNA downstream 509908 38463009 ~ 38465285 (+) True LOC120571053
XM_039819760.1 mRNA downstream 620720 38573821 ~ 38593537 (+) True LOC120571058
XM_039819744.1 mRNA downstream 659496 38612597 ~ 38614881 (+) True LOC120571044
TU187628 other upstream 185486 37511709 ~ 37523132 (+) False LOC120570989
TU187637 other upstream 262034 37443392 ~ 37446584 (+) True G139164
XR_005641164.1 other upstream 297438 37400292 ~ 37411180 (+) False LOC120571062
TU187560 other upstream 332911 37361943 ~ 37375707 (+) False G139141
TU187611 other upstream 592147 37067758 ~ 37116471 (+) True G139152
TU188180 other downstream 473649 38426750 ~ 38430454 (+) True G139581
TU188294 other downstream 640474 38593575 ~ 38594662 (+) False G139594
TU188586 other downstream 985153 38938254 ~ 38942817 (+) False LOC120571012
TU188606 other downstream 1019609 38972710 ~ 38999473 (+) False G139838
TU188607 other downstream 1045420 38998521 ~ 38999473 (+) True G139838

Expression Profile