RNA id: TU188285


Basic Information

Item Value
RNA id TU188285
length 3597
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G139591
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 38268879 ~ 38272512 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccaGCAGACACCCTGCCTCcagtacgtctcatctccggtttttcctgcatccacagtgtgtgtgtctgttgtgtctgtgttgtgtgtgtgtgtgtgtctgtgttgtgtgtgtgtgtgtgtctgtgttgtgtgtgtgtgcgcgtcagttGCGAGGGGAACTGAGAAGCAGCCCCGCCCACTGCAGAGaaccgacaggattgaaacagcagcagctttcagcgacttaAGAGTACAAAATCATCACAGCGTACaatgatgttaaaatgtgtacaggttggcaggacggacTGAAATGTCTTTCGATGTACGTGTAGTTGGTAAAAACTAAACATAAACAAGGAAATGATTTTGGCGACGTACGTGTGTTACGtcaacctgttctcactcctgcttggtcagtggctctcagcgtcacatACTGACgtaaagtctggcacgtgggactgctgggattggttgaagtcacgggaaactccggttattggtcaacatttgcggaaaagttgtggtgattggtcaaaattgcgagtcgcaccaaattcacagtgattggttgaattgGCGCGATCACTCAGGAGAAGTCAGAGAGGAGGTTGAAaagatgggattttttttatttaccccAAATAAGGCCAATTCAGCatgaataataatacaaaaaataacaaaattaaaGCCCCAAGAGCTATAGCATATAAATCCTCGCTGTATTAAATATGTGGAAAAGAAAGCTACAGGATTACTGTGGGGTATTTGTTTAATGACTAGGTAAACAGATGATTTGACATTTAACAGTGTGAtaattaacagaatatattgacacactaaacacatatatataggcAATCTTTGCACTCAGTCTTTGTGAAATGAAATAGGTAGCGTATTGCCCCATCACACACTAATATTTCATCTGCAAAGTTAAACCAAGCCATTTTGGAGTGTTTTTTGCTCCTATCACATTATTACTGTGAGCTCATGTTTCACTATATCTGCAAGTTCTGCATCTCAAATTAACAAGCACAACCAAAGCCAGATGTATGAATAAAATGTCTTTTCAGCAGTATAACAAAGTTATAATGGCATAAAcataagaaaaaaggaaaaacttaagaatttatttaaaaatagaaacaaaaatTGAATCAGATAATAACCCATTTTcctaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtatgtatgtatgtatgtatatatatatatatatatatgaacacaTGTACATATTCAACATTTTCAGTTTCTGTATATTCAATACAGAAACTGAAAATATTCTTATAGAAATATGTCCATTATCCTCCGATTTGTCAATTGTAACCTGCTCGAAGATTTTGGTTCAGCATTTTCAGCAGGTAATACATTTTGATTActgttattaatttattatcGTGTGCACAGTAATCACAAAGAAGCAGTCGTTGGCGgttaagaaacagaaacattccTTCCATGTAGTTACTGTTATTCCGGGCTGATGTAATCCTATCAATAAGTTTTTAAAAAGCCAcgataaataaaatacaaattccaatcagcactgtcatcagtttcaggatcagaagagtctccagtctggtcttcagtctctggttgtaaaagtggatgtgagttcctggctggttctggtcctccacagtccatcagcttctgtttccatgtgttcagttcgtctctgatgaagctgcgaggactgagcttcctcttcatcatcttcactcttcacagggacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgctccacagttcctcctgttcctctttaatgtgtggggggggctcttgCTCCTCCTGGTCCACattggagctacactcctgctgctcagggggaacctcttctttaaccaccaacagATTTCAACACTCACACTGGGCAGCTATATATTTTCTCTCCCATATGAGTTCTTATGTGTTTCtatacattttctttctgtgtaaaagatttcttacagattGAGCTGAGGTTTTTCCTATGTATGAGTTAACATGTGTTTCTTAAGAATTGACTTGAGGCCAAATCTTTTAtcacaaactgagcagctgaaaggtttgtCTCCTGTATGAGTTATCATGTGGGTCTTCAGATTATAATCATTTCCAAATCTTGTATCACAAAgtgagcagctaaaaggtttttctcctgtgtgagttatcatgtgtctcttcagatgTTCCTTCTGGCCAAATCGTTtatcacactcagagcagctgaaaggtttctctcctgtgtggattctcatgtgtatCTTAGAATTTCCCTTTAAATCAAATGGTTGGATGAATGCTTTCTTACAATGTAAATCATGtatcagagagtttaaagctgactgaggttctctggtctccttccaatcagcactgacagtctcaggttcagaagagtctccagtctggtcttcagtctctggttgtaaaagtggatgtgagttcctgggtggttctggtcctccacagtcctctccatcagcttctgtttccatgtgttgagtttgtctctgatgaagctgtgaggactgagcttcctcttcatcatcttcactcttcacagggacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgctccacagttcctcctgttcctctttaatgtgtggggggggctctggctcctgctggtccacactggagctacactcctgctgctcagggggaacctcttctttaaccaccaacagctgctcaacatctgcaggaaacagaatCAAATACAgacaactgtttagtcagtacttttagctaactaggGAGTCATCCCCCTGCTAGCTGTATTAGCGCTGTTGACCGTGTTAGCACGTTTAGCCACGTTAGATAGACACTGCCTCCCAGGCTCTATCATCTCCCCGGTTGCCATATCTTTATGGATGTATTACCTATTAGATCATCATAGACTAAAATGCTATCATTGCGGACTGGAGCATATGTAGGCATCACGCAGGTTAGAGCTGCCAATCTACCGACGACAGTCGACACCTTCCTGTAATAACATCttactgtttagtcagtacttttagataactgtttcaactgtttagtcaaTCCTTTTAGCTactattttaactgtttatACAGTACTTTTAGCAGCTAAAAGTGAGTTACTGGATGGTTccggtcctccacagtcctctccatcagcttccaTTTTCATGTGTTAAGTTTGTCtatgatgaagctgtgaggactgagctttctcttcatcatcttcattcttcacagggacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgctccacagttcctcctgttcctctttaatgtgtggggggggctctggctcctgctggtccacactggagctacactcctgctgctcagggggaacctcttctttaaccaccaacagctgattaacatctgcaggaaacaaaaT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188238 lncRNA upstream 11913 37830725 ~ 38256966 (+) False G139586
TU188257 lncRNA upstream 11913 38254920 ~ 38256966 (+) False G139586
TU188236 lncRNA upstream 28602 38120665 ~ 38240277 (+) False G139586
TU188314 lncRNA upstream 68585 38176817 ~ 38200294 (+) False G139601
TU188315 lncRNA upstream 90952 38169161 ~ 38177927 (+) True G139601
XR_005641173.1 lncRNA downstream 120233 38392745 ~ 38395468 (+) True LOC120571083
XR_005641189.1 lncRNA downstream 131792 38404304 ~ 38417926 (+) True LOC120571098
XR_005641190.1 lncRNA downstream 145455 38417967 ~ 38418407 (+) True LOC120571099
XR_005641180.1 lncRNA downstream 220428 38492940 ~ 38507013 (+) True LOC120571090
TU188522 lncRNA downstream 312103 38584615 ~ 38585609 (+) True G139777
XM_039819674.1 mRNA upstream 652392 37613121 ~ 37616487 (+) True LOC120570991
XM_039819672.1 mRNA upstream 716981 37527705 ~ 37551898 (+) True LOC120570990
XM_039819671.1 mRNA upstream 746202 37497634 ~ 37522677 (+) True LOC120570989
XM_039819769.1 mRNA upstream 760183 37507022 ~ 37508696 (+) True LOC120571065
XM_039819670.1 mRNA upstream 776336 37478550 ~ 37492543 (+) True LOC120570988
XM_039819758.1 mRNA downstream 65925 38338437 ~ 38340755 (+) True LOC120571056
XM_039819686.1 mRNA downstream 166160 38438672 ~ 38440490 (+) True LOC120571002
XM_039819754.1 mRNA downstream 190497 38463009 ~ 38465285 (+) True LOC120571053
XM_039819760.1 mRNA downstream 301309 38573821 ~ 38593537 (+) True LOC120571058
XM_039819744.1 mRNA downstream 340085 38612597 ~ 38614881 (+) True LOC120571044
TU188274 other upstream 395755 37867909 ~ 37873124 (+) True G139586
TU187628 other upstream 745747 37511709 ~ 37523132 (+) False LOC120570989
TU187637 other upstream 822295 37443392 ~ 37446584 (+) True G139164
XR_005641164.1 other upstream 857699 37400292 ~ 37411180 (+) False LOC120571062
TU187560 other upstream 893172 37361943 ~ 37375707 (+) False G139141
TU188180 other downstream 154238 38426750 ~ 38430454 (+) True G139581
TU188294 other downstream 321063 38593575 ~ 38594662 (+) False G139594
TU188586 other downstream 665742 38938254 ~ 38942817 (+) False LOC120571012
TU188606 other downstream 700198 38972710 ~ 38999473 (+) False G139838
TU188607 other downstream 726009 38998521 ~ 38999473 (+) True G139838

Expression Profile