RNA id: TU188301


Basic Information

Item Value
RNA id TU188301
length 1886
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G139596
representative False

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 38808850 ~ 38918553 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCACTCCATGCGGatttatttgttacattttaacaaacaaaatcaaattttCATGACTCTCTTCTTTTAGAGCGTTTTGGGTGGTGTCAGATGCACACATTCACGCCCACAGTTACCTCGTGTTGGTTACATCTTAAGATGGACCTGAACTGGTGATATCTTTACTTCTAACAGTCCTCTCATCTTCCTTTTCTTAAGTACACCTAGGTCGTTGTGACCCAGACAATAACTACTAACGTACATGCTAGTCAACAGATGGTTTACTTCAAATGATTTCACTTTATTTCATCCTGGAGGGTACTCAGCATGTCCTGGTGTACCACACCGGTCATATCGATTATTACATATCGGTCATATAACGATTATATTTCTTTACTTCATTAGCTTTACCATGGCCTAATTAGTGGCATAGGAGACACTATACATGTCAAAAGACCTTAATCATTTTGGTGTCACTGATCATATTACCTTGGAACATAGCAATGCACAAGTgagtttttatagttttatacaGATCATAATATGTCCATCTCAGCTTTGCTTCAAAGAGAAAACTCCTCCGCTCCCTGACAGGAAACACCGTGCTAGGCTAACTTCCCTATGCTACCTCCATCACATCTCCCTTGGTTAAACTAAAGATAGctttctggtcctccacagtcctctccatcagcttctgtttccatcagCCCAACACATTTATGTCTTTTGACATGAGAACGccaggcaaatcttttgttacaaacactgcagctgaatcttttctctcctgtgtggactgtCATGTGTGACCATAAATTTCCTCTCTCTGTAAAggatttcttacagactgagcagctgaaaggtttttcaccTGTGTGAGTTCGCCTGTGTGACTGTAAATGTgcactctgtgtaaaagatttcttacagactgagcagctgaaaggtttttcaccTGTGTGAGTTTTCATGTGCGTCCGTAAACCTCCTCTCgctgtaaaagatttcttacagactaagcagctgaaaggtttttctcctgtgtgagttctcatgtgtatCCGTAAATCTCCACTAcgtgtaaaagatttcttacagactgagcatctgaaaggtttttctcctgtgtgagtttgCCTGTGTGACTGTAAATGTCCACTCTGTTtgaaagatttcttacagactgagcagctgaaaggtttttctcctgtgtgagtttgCCTGTGTGACTGTAAATGTCCACTCTGTTtgaaagatttcttacagactgagcagctgaaaggtttttctccagaATGAGTCATCATGTGGTTCTTCAATGTTCTATTGTCAGTGAATGCtttaccacactcagagcagccaaaaggtttttctcctgtgtggattctcatgtgtttcttcAGATGTTCCTTGCGGCCAAATCTTCTCACACACTCAgaacagctgaatgttttcttacatcttaaatcatgtttcagagagtttaaagctgtctgaggttctctggtctccttccaatcagcactgtcatcagtctcaggttcagaagagtctccagtctggtcttcagtctctggttgtaaacgtggatgtgagttcctggctggttctggtcctccacagtcttctccatcagcttctgtttccatgtgttgagtttgtctttgatgaagctgtgaggactgagcttcctcttcatcatcttcactcttcacagggacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgctccacagttcctcctgttcctctttaatgtgtggcgggggctctggctcctgctggtccacactggagctacactcctgctgctcagggatAACCTCTCctttaaccaccaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188540 lncRNA upstream 65084 38740572 ~ 38743766 (+) True G139793
TU188289 lncRNA upstream 214188 38593575 ~ 38594662 (+) False G139594
TU188291 lncRNA upstream 214188 38593575 ~ 38594662 (+) True G139594
TU188292 lncRNA upstream 214188 38593575 ~ 38594662 (+) False G139594
TU188522 lncRNA upstream 223241 38584615 ~ 38585609 (+) True G139777
TU188579 lncRNA downstream 8150 38926703 ~ 38926931 (+) True G139825
TU188595 lncRNA downstream 43110 38961663 ~ 39035152 (+) False G139834
TU188596 lncRNA downstream 58662 38977215 ~ 38977705 (+) False G139834
TU188599 lncRNA downstream 58662 38977215 ~ 38983586 (+) True G139834
TU188602 lncRNA downstream 59936 38978489 ~ 39021114 (+) False G139835
XM_039819691.1 mRNA upstream 102520 38697721 ~ 38706330 (+) True LOC120571006
XM_039819690.1 mRNA upstream 111295 38690978 ~ 38697555 (+) True LOC120571005
XM_039819689.1 mRNA upstream 140906 38644958 ~ 38667944 (+) True LOC120571004
XM_039819772.1 mRNA upstream 176837 38630789 ~ 38632013 (+) True LOC120571068
XM_039819744.1 mRNA upstream 193969 38612597 ~ 38614881 (+) True LOC120571044
XM_039819696.1 mRNA downstream 18193 38936746 ~ 38957569 (+) True LOC120571012
XM_039819699.1 mRNA downstream 134646 39053199 ~ 39121788 (+) True LOC120571016
XM_039820389.1 mRNA downstream 158163 39076716 ~ 39082222 (+) False LOC120571448
XM_039820387.1 mRNA downstream 158163 39076716 ~ 39080641 (+) True LOC120571448
XM_039819702.1 mRNA downstream 262282 39180835 ~ 39184378 (+) True LOC120571018
TU188294 other upstream 214188 38593575 ~ 38594662 (+) False G139594
TU188180 other upstream 378396 38426750 ~ 38430454 (+) True G139581
TU188274 other upstream 935726 37867909 ~ 37873124 (+) True G139586
TU187628 other upstream 1285718 37511709 ~ 37523132 (+) False LOC120570989
TU187637 other upstream 1362266 37443392 ~ 37446584 (+) True G139164
TU188586 other downstream 19701 38938254 ~ 38942817 (+) False LOC120571012
TU188606 other downstream 54157 38972710 ~ 38999473 (+) False G139838
TU188607 other downstream 79968 38998521 ~ 38999473 (+) True G139838
TU188610 other downstream 79968 38998521 ~ 38999473 (+) False G139838
TU188611 other downstream 79968 38998521 ~ 38999473 (+) False G139838

Expression Profile