RNA id: TU188317


Basic Information

Item Value
RNA id TU188317
length 2620
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G139602
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 38105858 ~ 38114992 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtggactacaagtagcctaataagtagGTGTTAAGGGTAGATGTAGAGGAGTAGTCGTGAGCAGGTGTAAACACTCAGAATGAGTCAGAGATGAAGTTGAAAAGATgggatttttattattttcccaATTAAGGCCCACAGGGAAAATTAACAATTAACAAAACcacaattaaaagaaaaaaaacaacactttcacaaaaataaaataaatgggattcaaaaaattcaaaaactttttttaactaGTCCTCAGAGCCTTCAACAGACTTACGTCCTccattctctccctctctcgagCAACTGAAACTGACAGTCTATAGACCTGTGGCGCACCCCTGGAATTGGAACataccaacacaaaaaaaacatacagggGTGGCTCAGTTGAGTAGACAATAAAAGCTAAAAACAGCCAAAATTAATAGATCTATTAGGCGAGAAATTTACCAAAGATTATTTACATGATTCACAGAAACATTTCACAAAGCCACCTTGACGGCCAATAAAATAATTACTCATGATTCCGGTAACTTCCCGGGCGTTATTTAAACCTTTCCTTTATAAACAAAAGAGAGCAGACGCCGGTAAGCCACAAAACCTTTGTTACCTTTTAAACTCAATAAACAGCCATGTTTACACTTGACATAAGTGTTGTGGGATTATTATAACTGGTCATGTTTGTGAAGTAAATGGCATGGTTTTAAACAATAGAGAATTATGTATTGATGGATGTAGCTATAGCATATAAATCACTGCAGTATTAGATGTTAAATATGTGCAAAAGAAAGCTAAAGGATTGTGGGTGATTTGATGAATGGCTAGGCTAACAGATGATTTGAAAACAGTGTGATAATTAACAGAACATATTGACACTGTGAGAGCCATTTAGGTTTAGGTTTATTATTTGTTGCTGTTAAACCTCCCCCCACCAGGGGTAGCCAGGGCGCTGTCCATTTGGCTGTGACAGAGGGGATTTAATCAATGTCCAACTGGGCACAGGTGGTGGCAGGAGAAGGGAGCAAACAGTTTTTTGACTGTGCTATATGTTATGAGAAGGAAATAATGTGTTTTGGTTTGATGTTTACACATATGAATGGACTCTATGTATGGCTCTATGTATAACTGgctaagtttaaaataaatgctTACTGGCAATATTTGACATTGGCTCACATAGTGCACACGTCTTAAATAGTTCAATTATCCACCCAGAAATCGTAGTAGACGTTTTTGAGTAGCAAAGGGTCCCTACAGACACACTAACCAAACATACAGGCAACATTTACACTCAGTCTTTGAGAGATAAACTAAGTAGTGCATGGCTACCGTGGCGGCAGCCATGCGCTCCGTCATAGtaggattaaataaaaaatacttgcACCTTACAAGTGAATCAAAGTAGCCGACGGTAGGCTATAACTACTTTCCACCAcggataaaatgtaataatattacctgtagcaagactaaacattaattcctgACATGTTATCTGTCAGTTGCTCGGTCACATTGCTGTCGGcactgacaggacacagatcagttaccgtctctggttctggttctgaccacgggaacagtgacgggacagttcgcttcaacgcagcgtaaaAAACTCCGGAAAATAATGTCCGTGTCGCAAATGTATCTCTGCAGTCATTTACACCACCGAATTGTAACGTGTTACTCCCATCACTGATGGACACTATTCATACTAATCTAATGAACTGGACTTTGTTGTCAGAAGCGAAAGCCCTCTTCCCGGCTTACTGAATTAtaccattacattttaaaaattttaattGTTACCTGCAGAATTTTGTATACAAATATTTTCAGTACAATTAATATAAGAGGTCTGCACCTCTTTCTGCTCCCCACCCCGGGTCAGCTACCACCACAAATGGAATCTAAttatgtgggaaacactgaatgtcctctccatcagcttctgtttccatcggaccaacacatttatgtctTTTGACATCAGAACCCCAGGCAAATCTGTcgttacaaacactgcagctgaatcttttctctcctgtgtggacaaCAGTCATGTGTGACCGTAAACTTCgactctgtgtaaaagatttcttacagactgagcagctgaaaggcttttctcctgtgtgagttctcatgtgtttctgtaaatctccactctgtataaaagatttattacaaaCTGGGCAGCTGAAaagtttttctcctgtgtgagttctcatgtgtttctgtaaatctccactctgtgtaaaagatttcttacagactgagcagctgaaaggtttttctcctgtgtggattctcatgtgtctcttcagatcTGCCTTGTGGCCAAATATTTTCATACAATAAGAGCAGTTAAAATGTTTTTCCCCTGTGTGAGtcatcatgtgtctcttcagacCATAATTGAAgccaaatcttttcccacactccGAGCAGCTGAATCgtttatttcctcctgaatcatgtttcagagagtttaaagctgactgaggttctctggtctccttccaatcagcactgtcatcagtctcagattcagaagagtctccagtctggtcttcagtctctagTTGTAAATGTGGAtctgagttcctggctggttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188407 lncRNA upstream 33533 38062295 ~ 38072325 (+) True G139666
TU188395 lncRNA upstream 34833 38055583 ~ 38071025 (+) False G139662
TU188397 lncRNA upstream 34833 38055583 ~ 38071025 (+) False G139662
TU188398 lncRNA upstream 34833 38055583 ~ 38071025 (+) False G139662
TU188400 lncRNA upstream 34833 38060814 ~ 38071025 (+) False G139662
TU188236 lncRNA downstream 5673 38120665 ~ 38240277 (+) False G139586
TU188269 lncRNA downstream 5673 38120665 ~ 38129598 (+) False G139586
TU188425 lncRNA downstream 19163 38134155 ~ 38135617 (+) True G139683
TU188315 lncRNA downstream 54169 38169161 ~ 38177927 (+) True G139601
TU188314 lncRNA downstream 61825 38176817 ~ 38200294 (+) False G139601
XM_039819674.1 mRNA upstream 489371 37613121 ~ 37616487 (+) True LOC120570991
XM_039819672.1 mRNA upstream 553960 37527705 ~ 37551898 (+) True LOC120570990
XM_039819671.1 mRNA upstream 583181 37497634 ~ 37522677 (+) True LOC120570989
XM_039819769.1 mRNA upstream 597162 37507022 ~ 37508696 (+) True LOC120571065
XM_039819670.1 mRNA upstream 613315 37478550 ~ 37492543 (+) True LOC120570988
XM_039819758.1 mRNA downstream 223445 38338437 ~ 38340755 (+) True LOC120571056
XM_039819686.1 mRNA downstream 323680 38438672 ~ 38440490 (+) True LOC120571002
XM_039819754.1 mRNA downstream 348017 38463009 ~ 38465285 (+) True LOC120571053
XM_039819760.1 mRNA downstream 458829 38573821 ~ 38593537 (+) True LOC120571058
XM_039819744.1 mRNA downstream 497605 38612597 ~ 38614881 (+) True LOC120571044
TU188274 other upstream 232734 37867909 ~ 37873124 (+) True G139586
TU187628 other upstream 582726 37511709 ~ 37523132 (+) False LOC120570989
TU187637 other upstream 659274 37443392 ~ 37446584 (+) True G139164
XR_005641164.1 other upstream 694678 37400292 ~ 37411180 (+) False LOC120571062
TU187560 other upstream 730151 37361943 ~ 37375707 (+) False G139141
TU188180 other downstream 311758 38426750 ~ 38430454 (+) True G139581
TU188294 other downstream 478583 38593575 ~ 38594662 (+) False G139594
TU188586 other downstream 823262 38938254 ~ 38942817 (+) False LOC120571012
TU188606 other downstream 857718 38972710 ~ 38999473 (+) False G139838
TU188607 other downstream 883529 38998521 ~ 38999473 (+) True G139838

Expression Profile