RNA id: TU188402


Basic Information

Item Value
RNA id TU188402
length 270
lncRNA type inter_gene
GC content 0.49
exon number 5
gene id G139662
representative False

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 38055583 ~ 38112971 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtctgtgtctgtgtgtctctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtatgtgtgtgtgtgtgtgtctgtatgtgtgtctgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtgtctgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188224 lncRNA upstream 19442 37992441 ~ 38036141 (+) False G139586
TU188380 lncRNA upstream 32697 38021755 ~ 38022886 (+) True G139656
TU188246 lncRNA upstream 44529 37977502 ~ 38011054 (+) False G139586
TU188253 lncRNA upstream 44529 37992441 ~ 38011054 (+) False G139586
TU188372 lncRNA upstream 89317 37943721 ~ 37966266 (+) True G139649
TU188236 lncRNA downstream 7694 38120665 ~ 38240277 (+) False G139586
TU188269 lncRNA downstream 7694 38120665 ~ 38129598 (+) False G139586
TU188425 lncRNA downstream 21184 38134155 ~ 38135617 (+) True G139683
TU188315 lncRNA downstream 56190 38169161 ~ 38177927 (+) True G139601
TU188314 lncRNA downstream 63846 38176817 ~ 38200294 (+) False G139601
XM_039819674.1 mRNA upstream 439096 37613121 ~ 37616487 (+) True LOC120570991
XM_039819672.1 mRNA upstream 503685 37527705 ~ 37551898 (+) True LOC120570990
XM_039819671.1 mRNA upstream 532906 37497634 ~ 37522677 (+) True LOC120570989
XM_039819769.1 mRNA upstream 546887 37507022 ~ 37508696 (+) True LOC120571065
XM_039819670.1 mRNA upstream 563040 37478550 ~ 37492543 (+) True LOC120570988
XM_039819758.1 mRNA downstream 225466 38338437 ~ 38340755 (+) True LOC120571056
XM_039819686.1 mRNA downstream 325701 38438672 ~ 38440490 (+) True LOC120571002
XM_039819754.1 mRNA downstream 350038 38463009 ~ 38465285 (+) True LOC120571053
XM_039819760.1 mRNA downstream 460850 38573821 ~ 38593537 (+) True LOC120571058
XM_039819744.1 mRNA downstream 499626 38612597 ~ 38614881 (+) True LOC120571044
TU188274 other upstream 182459 37867909 ~ 37873124 (+) True G139586
TU187628 other upstream 532451 37511709 ~ 37523132 (+) False LOC120570989
TU187637 other upstream 608999 37443392 ~ 37446584 (+) True G139164
XR_005641164.1 other upstream 644403 37400292 ~ 37411180 (+) False LOC120571062
TU187560 other upstream 679876 37361943 ~ 37375707 (+) False G139141
TU188180 other downstream 313779 38426750 ~ 38430454 (+) True G139581
TU188294 other downstream 480604 38593575 ~ 38594662 (+) False G139594
TU188586 other downstream 825283 38938254 ~ 38942817 (+) False LOC120571012
TU188606 other downstream 859739 38972710 ~ 38999473 (+) False G139838
TU188607 other downstream 885550 38998521 ~ 38999473 (+) True G139838

Expression Profile