RNA id: TU188579


Basic Information

Item Value
RNA id TU188579
length 229
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G139825
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 38926703 ~ 38926931 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccttcctcttcatcatcttcactcttcacagggacaggagtgaatgggaacttggtgatatcagcctcctccagcccttgaagctgctctccctcctgactgctccacagttcttcctgttcctctttaatgtgtggggggggctctggctcctgctggtccacactggagctacactcctgctgctcctctttaATAACAATCTGGCTTTTGTCGTCTGGAGGCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188301 lncRNA upstream 8150 38808850 ~ 38918553 (+) False G139596
TU188553 lncRNA upstream 22430 38774315 ~ 38904273 (+) True G139803
TU188327 lncRNA upstream 68462 38856226 ~ 38858241 (+) True G139611
TU188298 lncRNA upstream 93016 38808850 ~ 38833687 (+) False G139596
TU188300 lncRNA upstream 93016 38808850 ~ 38833687 (+) True G139596
TU188595 lncRNA downstream 34732 38961663 ~ 39035152 (+) False G139834
TU188596 lncRNA downstream 50284 38977215 ~ 38977705 (+) False G139834
TU188599 lncRNA downstream 50284 38977215 ~ 38983586 (+) True G139834
TU188602 lncRNA downstream 51558 38978489 ~ 39021114 (+) False G139835
TU188613 lncRNA downstream 52110 38979041 ~ 38986014 (+) False G139839
XM_039819691.1 mRNA upstream 220373 38697721 ~ 38706330 (+) True LOC120571006
XM_039819690.1 mRNA upstream 229148 38690978 ~ 38697555 (+) True LOC120571005
XM_039819689.1 mRNA upstream 258759 38644958 ~ 38667944 (+) True LOC120571004
XM_039819772.1 mRNA upstream 294690 38630789 ~ 38632013 (+) True LOC120571068
XM_039819744.1 mRNA upstream 311822 38612597 ~ 38614881 (+) True LOC120571044
XM_039819696.1 mRNA downstream 9815 38936746 ~ 38957569 (+) True LOC120571012
XM_039819699.1 mRNA downstream 126268 39053199 ~ 39121788 (+) True LOC120571016
XM_039820389.1 mRNA downstream 149785 39076716 ~ 39082222 (+) False LOC120571448
XM_039820387.1 mRNA downstream 149785 39076716 ~ 39080641 (+) True LOC120571448
XM_039819702.1 mRNA downstream 253904 39180835 ~ 39184378 (+) True LOC120571018
TU188294 other upstream 332041 38593575 ~ 38594662 (+) False G139594
TU188180 other upstream 496249 38426750 ~ 38430454 (+) True G139581
TU188274 other upstream 1053579 37867909 ~ 37873124 (+) True G139586
TU187628 other upstream 1403571 37511709 ~ 37523132 (+) False LOC120570989
TU187637 other upstream 1480119 37443392 ~ 37446584 (+) True G139164
TU188586 other downstream 11323 38938254 ~ 38942817 (+) False LOC120571012
TU188606 other downstream 45779 38972710 ~ 38999473 (+) False G139838
TU188607 other downstream 71590 38998521 ~ 38999473 (+) True G139838
TU188610 other downstream 71590 38998521 ~ 38999473 (+) False G139838
TU188611 other downstream 71590 38998521 ~ 38999473 (+) False G139838

Expression Profile