RNA id: TU188618


Basic Information

Item Value
RNA id TU188618
length 601
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G139843
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 38995070 ~ 39008612 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtctgcctgtctgtctgtctctctctctgcctgtctctctctctgacggtctgtcactgtgtctgtctgtcactgtgtctgtctgtcactgtgtctgtctgtctctctctgtctgtctgtctgtctctctctgtctgcctgtctctctctctgcctgcctgcctttctctctccctgtctgtctgcctgtttctctgtctctctgcctgcctgtgtgtgtgtctctctgtctgcctgtgtgtctctctgtctgcctgtgtgtctctctgtctgcctgtgtgtctctctgtctgcctgtgtgtctctctgtctgcctgcctgcctctctgcctgcctgcctgcctgcctttctctctccctgtctgtctgtctgcctgtttctctgtctctctgcctgcctgtgtgtctctctgtctgcctgtctgtctctctgcctgcctgcctgcctgcctgcctctctccctgtctgtttctctgtctctctgcctgcctgtgtctctctgtctgtctccctgcctgcctgtctgtctctctgcctgtctgtggaTCTCTTTCTTATCTTACAGATAAACTGATTTTGCAGCTGAAATATCGACATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188613 lncRNA upstream 21966 38979041 ~ 38986014 (+) False G139839
TU188612 lncRNA upstream 21966 38984824 ~ 38986014 (+) True G139839
TU188599 lncRNA upstream 24394 38977215 ~ 38983586 (+) True G139834
TU188596 lncRNA upstream 30275 38977215 ~ 38977705 (+) False G139834
TU188579 lncRNA upstream 81049 38926703 ~ 38926931 (+) True G139825
TU188601 lncRNA downstream 1633 39010245 ~ 39077439 (+) True G139835
TU188598 lncRNA downstream 26209 39034821 ~ 39035152 (+) False G139834
TU188633 lncRNA downstream 35255 39043867 ~ 39064485 (+) True G139854
XR_005641230.1 lncRNA downstream 57472 39066084 ~ 39068090 (+) True LOC120571451
TU188659 lncRNA downstream 87322 39095934 ~ 39104580 (+) True G139864
XM_039819696.1 mRNA upstream 50411 38936746 ~ 38957569 (+) True LOC120571012
XM_039819691.1 mRNA upstream 301650 38697721 ~ 38706330 (+) True LOC120571006
XM_039819690.1 mRNA upstream 310425 38690978 ~ 38697555 (+) True LOC120571005
XM_039819689.1 mRNA upstream 340036 38644958 ~ 38667944 (+) True LOC120571004
XM_039819772.1 mRNA upstream 375967 38630789 ~ 38632013 (+) True LOC120571068
XM_039819699.1 mRNA downstream 44587 39053199 ~ 39121788 (+) True LOC120571016
XM_039820389.1 mRNA downstream 68104 39076716 ~ 39082222 (+) False LOC120571448
XM_039820387.1 mRNA downstream 68104 39076716 ~ 39080641 (+) True LOC120571448
XM_039819702.1 mRNA downstream 172223 39180835 ~ 39184378 (+) True LOC120571018
XM_039820390.1 mRNA downstream 182973 39191585 ~ 39192174 (+) True LOC120571450
TU188606 other upstream 8507 38972710 ~ 38999473 (+) False G139838
TU188607 other upstream 8507 38998521 ~ 38999473 (+) True G139838
TU188610 other upstream 8507 38998521 ~ 38999473 (+) False G139838
TU188611 other upstream 8507 38998521 ~ 38999473 (+) False G139838
TU188586 other upstream 65163 38938254 ~ 38942817 (+) False LOC120571012
TU188621 other downstream 3626 39012238 ~ 39015904 (+) True G139845
TU188647 other downstream 46159 39054771 ~ 39056867 (+) False G139856

Expression Profile