RNA id: TU188649


Basic Information

Item Value
RNA id TU188649
length 1186
lncRNA type sense_over
GC content 0.50
exon number 5
gene id G139856
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 39054771 ~ 39208169 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTCTAtgtgtttgcagtctgtcaggctgtctgatctcagaggaaggctgtttttctctggtctcagctctgagctccaacccctcccatgtgagagagctggacctgagctacaatcatccaggagactctACAGTGAAACTACTGTCAGCAGGACTGAAGGATCctctctggagactggacactctcagggtggagcctgctggagtcagatggttGACACCAGGTCCATGGaggtattcctgtgaactcacactggaaacaaacacagtgaacagatacctcaaactgtctgacaacaacaggaaggtgacattaGTGAAGgaggatcagccatatcctgatcatccagagaggtttgactactggtctcagctgctgtgtagagatggtctgactggtcgctgttactgggaggtggagaggagaggagaggttgatatatcagtgagttacagaggaatcaggaggggaggagagagagatgactgTAGGTTTGGatgtaatgatcagtcctggagtctgaaCTGCTCTGATGGTGGTTACTCTGTCTGGCACAATAACAGACCAatatccatctcctcctcctctctgtctctggtagagtagcagtgtatgtggactgtcctgctggctctctgtccttctactcAGTCTCcactgactcactgatccacatccacaccttcaacaccacattcactcagacTCTCTATCCTGGGTTTGGGTTCTGGTAtcctggttcctcagtgtctctgtgtcctgtgtagGATGGaggagacacagaaacacacacacacacagacacacacacacacacacacacacagacacacacagagacacacacacacagagacacacacacacagacacacacacacacacacacacacacagacacacacacagagacacacacacacacacagagatacacacacagagacacacacacacagacacacacagagacacacacacacacagacacacacagagatacacacacagacacacacacacgcacaaacacacacacacacacagagacacacacacacacagagacacacacacacacagacacacacacacacacagacacacacacacacacacacacacacagacacacacacagacacacacacaccccacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188659 lncRNA upstream 6468 39095934 ~ 39104580 (+) True G139864
TU188601 lncRNA upstream 33609 39010245 ~ 39077439 (+) True G139835
XR_005641230.1 lncRNA upstream 42958 39066084 ~ 39068090 (+) True LOC120571451
TU188633 lncRNA upstream 46563 39043867 ~ 39064485 (+) True G139854
TU188598 lncRNA upstream 75896 39034821 ~ 39035152 (+) False G139834
TU188664 lncRNA downstream 29955 39163732 ~ 39180619 (+) False G139865
TU188662 lncRNA downstream 30205 39163982 ~ 39180619 (+) True G139865
TU188660 lncRNA downstream 46401 39180178 ~ 39180619 (+) False G139865
TU188663 lncRNA downstream 46401 39180178 ~ 39180619 (+) False G139865
TU188677 lncRNA downstream 49517 39183294 ~ 39184528 (+) False LOC120571018
XM_039820389.1 mRNA upstream 28826 39076716 ~ 39082222 (+) False LOC120571448
XM_039820387.1 mRNA upstream 30407 39076716 ~ 39080641 (+) True LOC120571448
XM_039819696.1 mRNA upstream 153479 38936746 ~ 38957569 (+) True LOC120571012
XM_039819691.1 mRNA upstream 404718 38697721 ~ 38706330 (+) True LOC120571006
XM_039819690.1 mRNA upstream 413493 38690978 ~ 38697555 (+) True LOC120571005
XM_039819702.1 mRNA downstream 47058 39180835 ~ 39184378 (+) True LOC120571018
XM_039820390.1 mRNA downstream 57808 39191585 ~ 39192174 (+) True LOC120571450
XM_039819703.1 mRNA downstream 75061 39208838 ~ 39213480 (+) True LOC120571019
TU188647 other upstream 54181 39054771 ~ 39056867 (+) False G139856
TU188621 other upstream 95144 39012238 ~ 39015904 (+) True G139845
TU188607 other upstream 111575 38998521 ~ 38999473 (+) True G139838

Expression Profile