RNA id: TU188680


Basic Information

Item Value
RNA id TU188680
length 309
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G139879
representative True

Chromosome Information

Item Value
chromosome id NC_053124.1
NCBI id CM020921.1
chromosome length 39224300
location 39206344 ~ 39207380 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctgaaCTTAATTTAGTAAAAGTGTCAGTTTGTATTATTTCTGTATGTtaataaagaaatgaaagaaaaaaaaacgtcacgTCCGAACGGTCAGCTGACGCCTGAAGCTCACGTGACCGCTCCTCTAACCGtcacaacaaagatggcggccgCGCTGAAGACGCCGAGCTGCGgagctgcttcttcttctcctctctttcttctcttccttctcttctCAGTTTTCTCTTCGACTCAGAGTTCCTTCAGAGGAGAAACTTCCGGAAGAAAGTTGTCGGTAGTGTTGAACCCCGGCTGGCCCTCCTCCAC

Function

GO: NA

KEGG:

id description
ko05225 Hepatocellular carcinoma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188654 lncRNA upstream 12574 39192920 ~ 39193770 (+) True G139859
TU188643 lncRNA upstream 14002 39191405 ~ 39192342 (+) False G139856
TU188677 lncRNA upstream 21816 39183294 ~ 39184528 (+) False LOC120571018
TU188660 lncRNA upstream 25725 39180178 ~ 39180619 (+) False G139865
TU188682 lncRNA downstream 579 39207959 ~ 39209872 (+) False LOC120571019
XM_039820390.1 mRNA upstream 14170 39191585 ~ 39192174 (+) True LOC120571450
XM_039819702.1 mRNA upstream 21966 39180835 ~ 39184378 (+) True LOC120571018
XM_039819699.1 mRNA upstream 84556 39053199 ~ 39121788 (+) True LOC120571016
XM_039819703.1 mRNA downstream 1458 39208838 ~ 39213480 (+) True LOC120571019
TU188647 other upstream 149477 39054771 ~ 39056867 (+) False G139856
TU188621 other upstream 190440 39012238 ~ 39015904 (+) True G139845
TU188607 other upstream 206871 38998521 ~ 38999473 (+) True G139838

Expression Profile